Wednesday, January 26, 2022

 Herbert Yardley: king of the whistleblowers

Herbert O. Yardley is America's archetypical spook whistleblower. He had successfully modernized America's code-breaking power as an Army Signal Corps lieutenant during and shortly after World War I. But the powers that be decided to force him out of his well-paid post as a high-caliber code-cracker.

Herbert Yardley's NSA biography
http://www.nsa.gov/public_info/_files/cryptologic_spectrum/many_lives.pdf

As an NSA history says, Yardley, "with no civil service status or retirement benefits, found himself unemployed just as the stock market was collapsing and the Great Depression beginning. He left Queens and returned to his hometown of Worthington, Indiana, where he began writing what was to become the most famous book in the history of cryptology. There had never been anything like it. In today's terms, it was as if an NSA employee had publicly revealed the complete communications intelligence operations of the Agency for the past twelve years-all its techniques and major successes, its organizational structure and budget-and had, for good measure, included actual intercepts, decrypts, and translations of the communications not only of our adversaries but of our allies as well.

"The American Black Chamber created a sensation when it appeared on 1 June 1931, preceded by excerpts in the Saturday Evening Post, the leading magazine of its time. The State Department, in the best tradition of 'Mission: Impossible,' promptly disavowed any knowledge of Yardley's activities."

Government officials, though angry, decided to do nothing. According to some accounts, Yardley then went to work for the Japanese. The Canadians hired him briefly at the onset of World War I but British intelligence insisted on his ouster.

Yardley went on to write a successful book on poker strategies.

Wednesday, August 28, 2013

Note on probability and periodicty

Draft 1

Please let me know of errors. My email address is conant78@gmail.com



By PAUL CONANT

We consider a binary string that, we assume, began specifically at the first observation.

If that string appears to follow a periodic pattern, a question often asked is whether that string was nonrandomly generated, that is, whether the probabilities for bit selection are independent.

One approach is the runs test, which matches the number of runs against a normal distribution of runs of length n. This is a very useful test, but it fails for

00110011

which has the mean number of runs for n = 8 but which one might suspect is not as likely to be random as would be an aperiodic string.

So what we want to know are the number of periods, which we calculate as 2(1 + 2C2 + 4C2). That subset's members are all unique permutations, each of which we consider to occur with equal probability, based on the provisional condition of independence of probability for each bit, which is put at 1/2.

So let us consider this test for nonrandomness on a string with length n, where n is a composite.

Let n = 8

and the string is

00110011

On length 8 we have the factors 1, 2, 4, 8. Now a string composed of all 0s or all 1s is certainly periodic. So we use the factor 1, along with factors 2 and 4. But we do not consider the factor 8 because a period of length 8 with no repetitions gives us no information about the probability of periodicity (there is no obvious periodic pattern).

So then the cardinality of the set of periods is:

2[1 + 2C2 + 4C2] = 16

which we divide by 2^8, or

8/2^7 = 1/16.

So our reasoning is that the probability of happening upon a randomly generated periodic 8-bit string is 1/16, or 6.25% in contrast to happening upon an 8-bit string of a specific permutation agreed upon in advance, which is 2^-8 or 1/256, or 0.39%. The probability of happening upon an aperiodic bit string is of course 15/16 or 93.75%. This all seems reasonable, where p(specific permutation) < p(having property of periodicity when the bit-length is composite) < p(having property of periodicity on that same string length).

So we argue that the probability of nonrandom influence is 93.75% 

The general formula for strings with remainder 0 is

[1 + (A_1)C2 + ... (A_m)C2]/2^(n-1)

Let's check n = 9.

[1 + 3C2]/2^8 = 1/64

A caveat: sometimes one permutation corresponds to more than one period. It will be found that that only occurs when the number of bits equals p^m, where p is some prime and m is a positive integer. We check the case of 8 bits. Here we find that

0000,0000    0101,0101    0011,0011

and their mirror images are the only strings that have one period superposed on another. That means we might wish to subtract 3 from our set of periodic strings, giving  [2(1 + 2C2 + 4C2) - 3]/2^8 = 5/2^6 = 0.078. However, as n increases we will be able to neglect this adjustment.

We have been discussing exact periodicity. Often, however, we are confronted by partial periodicity, such as this:

00100100100

So what we want to know is the probability that this is part of string 001001001001

which we obtain by 1/64(1/2) = 1/128 = 0.0078;

similarly for 0010010010

where we calculate 1/64(1/4) = 1/256 =  0.0039. This represents the probability that the string is part of a periodic string of length 12.

This probability is distinct from the probability of happening upon a periodic 12-bit string, which is:

(1 + 2C2 + 3C2 + 4C2)/2^11 = 11/2^11 = 0.00537.

Important points:

1. The periodicity probabilities change in accordance with the primes, which are not distributed smoothly.

2. As bit length n tends to infinity, the numerator 2(set of combinations of aliquot factors + 1) tends to 0 with respect to denominator 2^n. This means that with n sufficiently large, the difference between the probability of periodicity and the probability of a specific permutation are close enough to be viewed as identical.

Point 2 permits us to look at a specific string of bit length n >> 5, see that it is periodic or "near" periodic, and assign it a probability of about 2^-n. This is important because we are able to discern the probability of dependence by use of a number that is traditionally only used to predict a specific bit string.

A nicety here is that the ratio of primes to composites diminishes as bit length goes to infinity. For a prime, there are only aperiodic strings. That is, we have pC2/2^n. In the case of 11 bits, we have 55/2048 = 0.0269. So as n increases, the probability that a randomly selected number could be periodic goes up. This consideration does not affect the basic idea we have given.

(The formula of periodicity -- with no repetitions of the period -- for a prime is simply 1/2^(p-1).)

Of course periodicity isn't the only sort of pattern. One can use various algorithms -- say all 0's except at the (n^2)th bit -- to make patterns.

A simple pattern is mirror imaging, in which the string on either side of a midpoint or mid-space is a mirror of the other; that is, bits are reversed.

To wit:

001001.100100

How many mirror pairs are there? Answer 2^6. So the probability of  happening upon a mirror pair is 2^6/2^12 =  1/64 = 0.015625..

Thursday, November 3, 2011

The knowledge delusion

Reflections on The God Delusion (Houghton Mifflin 2006) by the evolutionary biologist Richard Dawkins.

Preliminary remarks:
Our discussion focuses on the first four chapters of Dawkins' book, wherein he makes his case for the remoteness of the probability that a monolithic creator and controller god exists.

Alas, it is already November 2011, some five years after publication of 
Delusion. Such a lag is typical of me, as I prefer to discuss ideas at my leisure. This lag isn't quite as outrageous as the timing of my paper on Dawkins' The Blind Watchmaker, which I posted about a quarter century after the book first appeared.

I find that I have been quite hard on Dawkins, or, actually, on his reasoning. Even so, I have nothing but high regard for him as a fellow sojourner on spaceship Earth. Doubtless I have been unfair in not highlighting positive passages in
 Delusion, of which there are some (1). Despite my desire for objectivity, it is clear that much of the disagreement is rooted in my personal beliefs (see the link Zion below).

[Apologies for the helter-skelter end note system. However, there should be little real difficulty.]


Summary:
Dawkins applies probabilistic reasoning to etiological foundations, without defining probability or randomness. He disdains Bayesian subjectivism without realizing that that must be the ground on which he is standing. In fact, nearly everything he writes on probability indicates a severe lack of rigor. This lack of rigor compromises his other points.

Relevant links listed at bottom of page.


By PAUL CONANT

Richard Dawkins argues that he is no proponent of simplistic "scientism" and yet there is no sign in Delusion's first four chapters that in fact he isn't a victim of what might be termed the "scientism delusion." But, as Dawkins does not define scientism, he has plenty of wiggle room.

From what I can gather, those under the spell of "scientism" hold the, often unstated, assumption that the universe and its components can be understood as an engineering problem, or set of engineering problems. Perhaps there is much left to learn, goes the thinking, but it's all a matter of filling in the engineering details. (http://en.wikipedia.org/wiki/Scientism).

Though the notion of a Laplacian cosmos that requires no god to, every now and then, act to keep things stable is officially passe, nevertheless many scientists seem to be under the impression that the model basically holds, though needing a bit of tweaking to account for the effects of relativity and of quantum fluctuations.

Doubtless Dawkins is correct in his assertion that many American scientists and professionals are closet atheists, with quite a few espousing the "religion" of Einstein, who appreciated the elegance of the phenomenal universe but had no belief in a personal god (2).

Interestingly, Einstein had a severe difficulty with physical, phenomenal reality, objecting strenuously to the "probabilistic" requirement of quantum physics, famously asserting that "god" (i.e., the cosmos) "does not play dice." He agreed with Erwin Schroedinger that Schroedinger's imagined cat strongly implies the absurdity of "acausal" quantum behavior (3). It turns out that Einstein was wrong, with statistical experiments in the 1980s demonstrating that "acausality" -- within constraints -- is fundamental to quantum actions.

Many physicists have decided to avoid the quantum interpretation minefield, discretion being the better part of valor. Even so, Einstein was correct in his refusal to play down this problem, recognizing that modern science can't easily dispense with classical causality. We speak of energy in terms of vector sums of energy transfers (notice the circularity) but no one has a good handle on what the it is behind that abstraction.

A partly subjective reality at a fundamental level is anethema to someone like Einstein -- so disagreeable, in fact, that one can ponder whether the great scientist deep down suspected that such a possibility threatened his reasoning in denying a need for a personal god. Be that as it may, one can understand that a biologist might not be familiar with how nettlesome the quantum interpretation problem really is, but Dawkins has gone beyond his professional remit and taken on the roles of philosopher and etiologist. True, he rejects the label of philosopher, but his basic argument has been borrowed from the atheist philosopher Bertrand Russell.

Dawkins recapitulates Russell thus: "The designer hypothesis immediately raises the question of who designed the designer."

Further: "A designer God cannot be used to explain organized complexity because a God capable of designing anything would have to be complex enough to demand the same kind of explanation... God presents an infinite regress from which we cannot escape."

Dawkins' a priori assumption is that "anything of sufficient complexity to design anything, comes into existence only as the end product of an extended process of gradual evolution."

If there is a great designer, "the designer himself must be the end product of some kind of cumulative escalator or crane, perhaps a version of Darwinism in its own universe."

Dawkins has no truck with the idea that an omnipotent, omniscient (and seemingly paradoxical) god might not be explicable in engineering terms. Even if such a being can't be so described, why is he/she needed? Occam's razor and all that.

Dawkins does not bother with the results of Kurt Goedel and its implications for Hilbert's sixth problem: whether the laws of physics can ever be -- from a human standpoint -- both complete and consistent. Dawkins of course is rather typical of those scientists who pay little heed to that result or who have tried to minimize its importance in physics. A striking exception is the mathematical physicist Roger Penrose who saw that Goedel's result was profoundly important (though mathematicians have questioned Penrose's interpretation).

A way to intuitively think of Goedel's conundrum is via the Gestalt effect: the whole is greater than the sum of its parts. But few of the profound issues of phenomenology make their way into Dawkins' thesis. Had the biologist reflected more on Penrose's The Emperor's New Mind: Concerning Computers, Minds and The Laws of Physics (Oxford 1989), perhaps he would not have plunged in where Penrose so carefully trod.

Penrose has referred to himself, 
according to a Wikipedia article, as an atheist. In the film A Brief History of Time, the physicist said, "I think I would say that the universe has a purpose, it's not somehow just there by chance ... some people, I think, take the view that the universe is just there and it runs along -- it's a bit like it just sort of computes, and we happen somehow by accident to find ourselves in this thing. But I don't think that's a very fruitful or helpful way of looking at the universe, I think that there is something much deeper about it."

By contrast, we get no such ambiguity or subtlety from Dawkins. Yet, if one deploys one's prestige as a scientist to discuss the underpinnings of reality, more than superficialities are required. The unstated, a priori assumption is, essentially, a Laplacian billiard ball universe and that's it, Jack.

Dawkins embellishes the Russellian rejoinder with the language of probability: What is the probability of a superbeing, capable of listening to millions of prayers simultaneously, existing? This follows his scorning of Stephen D. Unwin's The Probability of God (Crown Forum 2003), which cites Bayesian methods to obtain a high probability of god's existence.
http://www.stephenunwin.com/

Dawkins is uninterested in Unwin's subjective prior probabilities, all the while being utterly unaware that his own probability assessment is altogether subjective. Heedless of the philosophical underpinnings of probability theory, he doesn't realize that by assigning a probability of "remote" at the extremes of etiology, he is engaging in a subtle form of circular reasoning.

The reader deserves more than an easy putdown of Unwin in any discussion of probabilities. Dawkins doesn't acknowledge that Bayesian statistics is a thriving school of research that seeks to find ways to as much as possible "objectify" the subjective assessments of knowledgeable persons. There has been strong controversy concerning Bayesian versus classical statistics, and there is a reason for that controversy: it gets at foundational matters of etiology. Nothing on this from Dawkins.

Without a Bayesian approach, Dawkins is left with a frequency interpretation of probability (law of large numbers and so forth). But we have very little -- in fact Dawkins would say zero -- information about the existence or non-existence of a sequence of all powerful gods or pre-cosmoses. Hence, there are no frequencies to analyze. Hence, use of a probability argument is in vain.

Dawkins elsewhere says (4) that he has read the great statistician Ronald Fisher, but one wonders whether he appreciates the meaning of statistical analysis. Fisher, who also opposed the use of Bayesian premises, is no solace when it comes to frequency-based probabilities. Take Fisher's combined probability test, a technique for data fusion or "meta-analysis" (analysis of analyses): What are the several different tests of probability that might be combined to assess the probability of god?

Dawkins is quick to brush off William A. Dembski, the intelligent design advocate who uses statistical methods to argue that the probability is cosmically remote that life originated in a random manner. And yet Dawkins himself seems to have little or no grasp of the basis of probabilities.

In fact, Dawkins makes no attempt to define randomness, a definition routinely brushed off in elementary statistics texts but which represents quite a lapse when getting at etiological foundations (5) and using probability as a conceptual, if not mathematical, tool.

But, to reiterate, the issue goes yet deeper. If, at the extremes, causation is not nearly so clear-cut as one might naively imagine, then at those extremes probabilistic estimates may well be inappropriate.

Curiously, Russell discovered Russell's paradox, which was ousted from set theory by fiat (axiom). Then along came Goedel who proved that axiomatic set theory (a successor to the theory of types propounded by Russell and Alfred North Whitehead in their Principia Mathematica) could not be both complete and consistent. That is, Goedel jammed Russell's paradox right down the old master's throat, and it hurt. It hurt because Goedel's result makes a mockery of the fond Russellian illusion of the universe as giant computerized robot. How does a robot plan for and build itself? Algorithmically, it is impossible. Dawkins handles this conundrum, it seems, by confounding the "great explanatory power" of natural selection -- wherein lifeform robots are controlled by robotic DNA (selfish genes) -- with the origin of the cosmos.

But the biologist, so focused on this foundational issue of etiology, manages to avert his eyes from the Goedelian "frame problem." And yet even atheistic physicists sense that the cosmos isn't simplistically causal when they describe the overarching reality as a "spacetime block." In other words, we humans are faced with some higher or other reality -- a transcendent "force" -- in which we operate and which, using standard mathematical logic, is not fully describable. This point is important. Technically, perhaps, we might add an axiom so that we can "describe" this transcendent (topological?) entity, but that just pushes the problem back and we would then need another axiom to get at the next higher entity.

Otherwise, Dawkins' idea that this higher dimensional "force" or entity should be constructed faces the Goedelian problem that such construction would evidently imply a Turing algorithm, which, if we want completeness and consistency, requires an infinite regress of axioms. That is, Dawkins' argument doesn't work because of the limits on knowledge discovered by Goedel and Alan Turing. This entity is perforce beyond human ken.

One may say that it can hardly be expected that a biologist would be familiar with such arcana of logic and philosophy. But then said biologist should beware superficial approaches to foundational matters (6).

At this juncture, you may be thinking: "Well, that's all very well, but that doesn't prove the existence of god." But here is the issue: One may say that this higher reality or "power" or entity is dead something (if it's energy, it's some kind of unknown ultra-energy) or is a superbeing, a god of some sort. Because this transcendent entity is inherently unknowable in rationalistic terms, the best someone in Dawkins' shoes might say is that there is a 50/50 chance that the entity is intelligent. I hasten to add that probabilistic arguments as to the existence of god are not very convincing (7).

Please see Appendix on a priori probability for further discussion of the issue.

A probability estimate's job is to mask out variables on the assumption that with enough trials these unknowns tend to cancel out. Implicitly, then, one is assuming that a god has decided not to influence the outcome (8). At one time, in fact, men drew lots in order to let god decide an outcome. (One of the reasons that some see gambling as sinful is because it dishonors god and enthrones Lady Randomness.)

Curiously, Dawkins pans the "argument from incredulity" proffered by some anti-Darwinians but his clearly-its-absurdly-improbable case against a higher intelligence is in fact an argument from incredulity, being based on his subjective expert estimate.

Dawkins' underlying assumption is that mechanistic hypotheses of causality are valid at the extremes, an assumption common to modern naive rationalism.

Another important oversight concerns the biologist's Dawkins-centrism. "Your reality, if too different from mine, is quite likely to be delusional. My reality is obviously logically correct, as anyone can plainly see." This attitude is quite interesting in that he very effectively gives some important information about how the brain constructs reality and how easily people might suffer from delusions, such as being convinced that they are in regular communication with god.

True, Dawkins jokingly mentions one thinker who posits a Matrix-style virtual reality for humanity and notes that he can see no way to disprove such a scenario. But plainly Dawkins rejects the possibility that his perception and belief system, with its particular limits, might be delusional.

In Dawkins' defense, we must concede that the full ramifications of quantum puzzlements have yet to sink into the scientific establishment, which -- aside from a distaste for learning that, like Wile E. Coyote, they are standing on thin air -- has a legitimate fear of being overrun by New Agers, occultists and flying saucer buffs. Yet, by skirting this matter, Dawkins does not address the greatest etiological conundrum of the 20th century which, one would think, might well have major implications in the existence-of-god controversy.

Dawkins is also rather cavalier 
about probabilities concerning the origin of life, attacking the late Fred Hoyle's "jumbo jet" analogy without coming to grips with what was bothering Hoyle and without even mentioning that scientists of the caliber of Francis Crick and Joshua Lederberg were troubled by origin-of-life probabilities long before Michael J. Behe and Dembski touted the intelligent design hypothesis.

Astrophysicist Hoyle, whose steady state theory of the universe was eventually trumped by George Gamow's big bang theory, said on several occasions that the probability of life assembling itself from some primordial ooze was equivalent to the probability that a tornado churning through a junkyard would leave a fully functioning Boeing 747 in its wake. Hoyle's atheism was shaken by this and other improbabilities, spurring him toward various panspermia (terrestrial life began elsewhere) conjectures. In the scenarios outlined by Hoyle and Chandra Wickramasinghe, microbial life or proto-life wafted down through the atmosphere from outer space, perhaps coming from "organic" interstellar dust or from comets.

One scenario had viruses every now and again floating down from space and, besides setting off the occasional pandemic, enriching the genetic structure of life on earth in such a way as to account for increasing complexity. Hoyle was not specifically arguing against natural selection, but was concerned about what he saw as statistical troubles with the process. (He wasn't the only one worried about that; there is a long tradition of scientists trying to come up with ways to make mutation theory properly synthesize with Darwinism.)

Dawkins laughs off Hoyle's puzzlement about mutational probabilities without any discussion of the reasons for Hoyle's skepticism or the proposed solutions.

There are various ideas about why natural selection is robust enough to, thus far, prevent life from petering out (9). In my essay Do dice play God? (link above), I touch on some of the difficulties and propose a neo-Lamarckian mechanism as part of a possible solution, and at some point I hope to write more about the principles that drive natural selection. At any rate, I realize that Dawkins may have felt that he had dealt with this subject elsewhere, but his four-chapter thesis omits too much. A longer, more thoughtful book -- after the fashion of Penrose's The Emperor's New Mind -- is, I would say, called for when heading into such deep waters.

Hoyle's qualms, of course, were quite unwelcome in some quarters and may have resulted in the Nobel prize committee bypassing him. And yet, though the space virus idea isn't held in much esteem, panspermia is no longer considered a disrespectable notion, especially as more and more extrasolar planets are identified. Hoyle's use of panspermia conjectures was meant to account for the probability issues he saw associated with the origin and continuation of life. (Just because life originates does not imply that it is resilient enough not to peter out after X generations.)

Hoyle, in his own way, was deploying panspermia hypotheses in order to deal with a form of the anthropic principle. If life originated as a prebiotic substance found across wide swaths of space, probabilities might become reasonable. It was the Nobelist Joshua Lederberg who made the acute observation that interstellar dust particles were about the size of organic molecules. Though this correlation has not panned out, that doesn't make Hoyle a nitwit for following up.

In fact, Lederberg was converted to the panspermia hypothesis by yet another atheist (and Marxist), J.B.S. Haldane, a statistician who was one of the chief architects of the "modern synthesis" merging Mendelism with Darwinism.

No word on any of this from Dawkins, who dispatches Hoyle with a parting shot that Hoyle (one can hear the implied chortle) believed that archaeopteryx was a forgery, after the manner of Piltdown man. The biologist declines to tell his readers about the background of that controversy and the fact that Hoyle and a group of noted scientists reached this conclusion after careful examination of the fossil evidence. Whether or not Hoyle and his colleagues were correct, the fact remains that he undertook a serious scientific investigation of the matter.(9,0)

http://www.chebucto.ns.ca/Environment/NHR/archaeopteryx.html

Another committed atheist, Francis Crick, co-discoverer of the doubly helical structure of DNA, was even wilder than Hoyle in proposing a panspermia idea in order to account for probability issues. He suggested in a 1970s paper and in his book Life Itself: Its Origin and Nature (Simon & Schuster 1981) that an alien civilization had sent microbial life via rocketship to Earth in its long-ago past, perhaps as part of a program of seeding the galaxy. Why did the physicist-turned-biologist propose such a scenario? Because the amino acids found in all lifeforms are left-handed; somehow none of the mirror-image right-handed compounds survived, if they were ever incorporated at all. That discovery seemed staggeringly unlikely to Crick (9:1).

I don't bring this up to argue with Crick, but to underscore that Dawkins plays Quick-Draw McGraw with serious people without discussing the context. I.e., his book comes across as propagandistic, rather than fair-minded. It might be contrasted with John Allen Paulos' book Irreligion (see Do dice play god? above), which tries to play fair and which doesn't make duffer logico-mathematical blunders (10).

Though Crick and Hoyle were outliers in modern panspermia conjecturing, the concept is respectable enough for NASA to take seriously.

The cheap shot method can be seen in how Dawkins deals with Carl Jung's claim of an inner knowledge of god's existence. Jung's assertion is derided with a snappy one-liner that Jung also believed that objects on his bookshelf could explode spontaneously. That takes care of Jung! -- irrespective of the many brilliant insights contained in his writings, however controversial. (Disclaimer: I am neither a Jungian nor a New Ager).

Granted that Jung was talking about what he took to be a paranormal event and granted that Jung is an easy target for statistically minded mechanists and granted that Jung seems to have made his share of missteps, we make three points:

1. There was always the possibility that the exploding object occurred as a result of some anomalous, but natural event.

2. A parade of distinguished British scientists have expressed strong interest in paranormal matters, among them officers of paranormal study societies. The American Brian Josephson, who received a Nobel prize for the quantum physics behind the Josephson junction, speaks up for the reality of mental telepathy (for which he has been ostracized by the "billiard ball" school of scientists).

3. If Dawkins is trying to debunk the supernatural using logical analysis, then it is not legitimate to use belief in the supernatural to discredit a claim favoring the supernatural.

Getting back to Dawkins' use of probabilities, the biologist contends with the origin-of-life issue by invoking the anthropic principle and the principle of mediocrity, along with a verbal variant of Drake's equation http://en.wikipedia.org/wiki/Drake_equation

The mediocrity principle says that astronomical evidence shows that we live on a random speck of dust on a random dustball blowing around in a (random?) mega dust storm.

The anthropic principle says that, if there is nothing special about Earth, isn't it interesting how Earth travels about the sun in a "Goldilocks zone" ideally suited for carbon based life and how the planetary dynamics, such as tectonic shift, seem to be just what is needed for life to thrive (as discussed in the book Rare Earth: Why Complex Life is Uncommon in the Universe by Peter D. Ward and Donald Brownlee (Springer Verlag 2000))? Even further, isn't it amazing that the seemingly arbitrary constants of nature are so exactly calibrated as to permit life to exist, as a slight difference in the index of those constants known as the fine structure constant would forbid galaxies from ever forming? This all seems outrageously fortuitous.

Let us examine each of Dawkins' arguments.

Suppose, he says, that the probability of life originating on Earth is a billion to one or even a billion billion to one (10^-9 and 10^-18). If there are that many Earth-like planets in the cosmos, the probability is virtually one that life will arise spontaneously. We just happen to be the lucky winner of the cosmic lottery, which is perfectly logical thus far.

Crick, as far as I know, is the only scientist to point out that we can only include the older sectors of the cosmos, in which heavy metals have had time to coalesce from the gases left over from supernovae -- i.e., second generation stars and planets (by the way, Hoyle was the originator of this solution to the heavy metals problem). Yet still, we may concede that there may be enough para-Earths to answer the probabilities posed by Dawkins.

Though careful to say that he is no expert on the origin of life, Dawkins' probabilities, even if given for the sake of argument, are simply Bayesian "expert estimates." But, it is quite conceivable that those probabilities are far too high (though I candidly concede it is very difficult to assign any probability or probability distribution to this matter).

Consider that unicellular life, with the genes on the DNA (or RNA) acting as the "brain," exploits proteins as the cellular workhorses in a great many ways. We know that sometimes several different proteins can fill the same job, but that caveat doesn't much help what could be a mind-boggling probability issue.

Suppose that, in some primordial ooze or on some undersea volcanic slope, a prebiotic form has fallen together chemically and, in order to cross the threshold to lifeform, requires one more protein to activate. A protein is the molecule that takes on a specific shape, carrying specific electrochemical properties, after amino acids fold up. Protein molecules fit into each other and other constituents of life like lock and key (though on occasion more than one key fits the same lock).

The amino acids used by terrestrial life can, it turns out, be shuffled in many different ways to yield many different proteins. How many ways? About 10^60, which exceeds the number of stars in the observable universe by 24 orders of magnitude! And the probability of such a spark-of-life event might be in that ball park. If one considers the predecessor protein link-ups as independent events and multiplies those probabilities, we would come up with numbers even more absurd.

But, Dawkins has a way out, though he loses the thread here. His way out is that a number of physicists have posited, for various reasons, some immense -- even infinite -- number of "parallel" universes, which have no or very weak contact with this one and are hence undetectable. This could handily account for our universe having the Goldilocks fine structure constant and, though he doesn't specify this, might well provide enough suns in those universes that have galaxies to account for even immensely improbable events.

I say Dawkins loses the thread because he scoffs at religious people who see the anthropic probabilities as favoring their position concerning god's existence without, he says, realizing that the anthropic principle is meant to remove god from the picture. What Dawkins himself doesn't realize is that he mixes apples and oranges here. The anthropic issue raises a disturbing question, which some religious people see as in their favor. Some scientists then seize on the possibility of a "multiverse" to cope with that issue.

But now what about Occam's razor? Well, says Dawkins, that principle doesn't quite work here. To paraphrase Einstein, once one removes all reasonable explanations the remaining explanation, no matter how absurd it sounds, must be correct.

And yet what is Dawkins' basis for the proposition that a host of undetectable universes is more probable than some intelligent higher power? There's the rub. He is, no doubt unwittingly, making an a priori assumption that any "natural" explanation is more reasonable than a supernatural "explanation." Probabilities really have nothing to do with his assumption.

But perhaps we have labored in vain over the "multiverse" argument, for at one point we are told that a "God capable of calculating the Goldilocks values" of nature's constants would have to be "at least as improbable" as the finely tuned constants of nature, "and that's very improbable indeed." So at bottom, all we have is a Bayesian expert prior estimate.

Well, say you, perhaps a Wolfram-style
 algorithmic complexity argument can save the day. Such an argument might be applicable to biological natural selection, granted. But what selected natural selection? A general Turing machine can compute anything computable, including numerous "highly complex" outputs programed by easy-to-write inputs. But what probability does one assign to a general Turing machine spontaneously arising, say, in some electronic computer network? Wolfram found that "interesting" celullar automata were rare. Even rarer would be a complex cellular automaton that accidentally emerged from random inputs.

I don't say that such a scenario is impossible, but rather to assume that it just must be so is little more than hand-waving.

In fact, we must be very cautious about how we use probabilities concerning emergence of high-information systems. Here is why: A sufficiently rich mix of chemical compounds may well form a negative feedback dynamical system. It would then be tempting to apply a normal probability distribution to such a system, and that distribution very well may yield reasonable results for a while. BUT, if the dynamical system is non-linear -- which most are -- the system could reach a threshold, akin to a chaos point, at which it crosses over into a positive feedback system or into a substantially different negative feedback system.

The closer the system draws to that tipping point, the less the normal distribution applies. In the chaos zone, normal probabilities are generally worthless. Hence to say that thus and such an outcome is highly improbable based on the previous state of the system is to misunderstand how non-linearities can work. This point, it should be conceded, might be a bit too abstruse for Dawkins' readers.

Dawkins tackles the problem of the outrageously high information values associated with complex life forms by conceding that a species, disconnected from information about causality, has only a remote probability of occurrence by random chance. But, he counters, there is in fact a non-random process at work: natural selection.

I suppose he would regard it a quibble if one were to mention that mutations occur randomly, and perhaps so it is. However, it is not quibbling to question how the powerful process of natural selection first appeared on the scene. In other words, the information values associated with the simplest known form (least number of genes) of microbial life is many orders of magnitude greater than the information values associated with background chemicals -- which was Hoyle's point in making the jumbo jet analogy.

And then there is the probability of life thriving. Just because it emerges, there is no guarantee that it would be robust enough not to peter out in a few generations (9).Dawkins dispenses with proponents of intelligent design, such as biologist Michael J. Behe, author of Darwin’s Black Box: The Biochemical Challenge to Evolution (The Free Press 1996), by resort to the conjecture that a system may exist after its "scaffolding" has vanished. This conjecture is fair, but, at this point, the nature of the scaffolding, if any, is unknown. Dawkins can't give a hint of the scaffolding's constituents because, thus far, no widely accepted hypothesis has emerged. Natural selection is a consequence of an acutely complex mechanism. The "scaffolding" is indeed a "black box" (it's there, we are told, but no one can say what's inside).

Though it cannot be said that intelligent design advocate Behe has proved "irreducible complexity," the fact is that the magnitude of organic complexity has even prompted atheist scientists to look far afield for plausible explanations.

Biologists, Dawkins writes, have had their consciousnesses raised by natural selection's "power to tame improbability" and yet that power has very little to do with the issues of the origins of life or of the universe and hence does not bolster his case against god. I suppose that if one waxes mystical about natural selection -- making it a mysterious, ultra-abstract principle, then perhaps Dawkins makes sense. Otherwise, he's amazingly naive.

Note
It must be acknowledged that in microbiological matters, probabilities need not always follow a routine independence multiplication rule. In cases where random matching is important, we have the number 0.63 turning up quite often.

For example, if one has n addressed envelopes and n identically addressed letters are randomly shuffled and then put in the envelopes, what is the probability that at least one letter arrives at the correct destination? The surprising answer is that it is the sum 1 - 1/2! + 1/3! ... up to n. For n greater than 10 the probability converges near 63%.

That is, we don't calculate, say 11^-11 (3.5x10^-15), or some routine binomial combinatorial multiple, but we have that our series approximates very closely 1 - e^-1 = 0.63.

Similarly, suppose one has eight distinct pairs of socks randomly strewn in a drawer and thoughtlessly pulls out six one by one. What is the probability of at least one matching pair?

The first sock has no match. The probability the second will fail to match the first is 14/15. The probability for the third failing to match is 12/14 and so on until the sixth sock. Multiplying all these probabilities to get the probability of no match at all yields 32/143. Hence the probability of at least one match is 1 - 32/143 or about 78%.

These are minor points, perhaps, but they should be acknowledged when considering probabilities in an evolutionary context.


Appendix on a priori probability
Let us digress a bit concerning the controversy over Bayesian inference (7a,7b), which is essentially about how one deploys an a priori probability.

If confronted with an urn about which we know only that it contains some black balls and some white ones and, for some reason, we are compelled to wager whether an initial draw yields a black ball, we might agree that our optimal strategy is to assign a probability of success of 1/2. In fact, we might well agree that -- barring resort to intuition or appeal to a higher power -- this is our only strategy. Of course, we might include the cost aspect in our calculation. A classic example is Pascal's wager on the nonexistence of god. Suppose, given a probability of say 1/2, one is wrong?

Now suppose we observe say 30 draws, with replacement, which we break down into three trials of 10 draws each. In each trial, the ratio is about 2/3 blacks to whites. Three trials isn't many, but is perhaps enough to convince us that the population proportion is close to 2 to 3. We have used frequency analysis to estimate that the independent probability of choosing a black ball is close to 2/3. That is, we have used experience to revise our probability estimate, using "frequentist" reasoning. What is the difference between three trials end-to-end and one trial? This question is central to the Bayesian controversy. Is there a difference in three simultaneous trials of 10 draws each and three run consecutively? These are slippery philosophical points that won't detain us here.

But we need be clear on what the goal is. Are we using an a priori initial probability that influences subsequent probabilities? Or, are we trying to detect bias (including neutral bias of 1/2) based on accumulated evidence?

For example, suppose we skip the direct proportions approach just cited and use, for the case of replacement, the Bayesian conditional probability formula, assigning an a priori probability of b to event B of a black ball withdrawal. That is, p(B | B) = p(B & B)/p(B). Or, that is, p(b | b) = p(b | b)p(b)/p(b) = b^2. For five black balls in succession, we get b^5.

Yes, quite true that we have the case in which the Bayesian formula collapses to the simple multiplication rule for independent events. But our point is that if we apply the Bayesian formula differently to essentially the same scenario, we get a different result, as the following example shows.

Suppose the urn has a finite number N of black and white balls in unknown proportion and suppose n black balls are drawn consecutively from the urn. What is the probability the next ball will be black? According to the Bayesian formula -- applied differently than as above -- the probability is (n+1)/(n+2) (8.0).

Let N = the total number of balls drawn and to be drawn and n = those that have been drawn, with replacement. S_n is the run of consecutive draws observed as black. S_N is the total number of black draws possible, those done and those yet to be done. What is the probability that all draws will yield black given a run of S_n black? That is

what is p[S_N = N | S_n = n]?

But this

= p[S_N = N and S_n = n]/p[S_n = n]

or (1/N+1)/(1/n+1) = (n+1)/(N+1). If N = n+1, we obtain (n+1)/(n+2).

C.D. Broad, in his derivation for the finite case, according to S.L. Zabell (8.0), reasoned that all ratios j/n are equally likely and discovered that the result is not dependent on N, the population size, but only on the sample size n. Bayes' formula is applied as a recursive summation of factorials, eventually leading to (n+1)/(n+2).


This result was also derived for the infinite case by Laplace and is known as the rule of succession.

Laplace's formula, as given by Zabell (8.0) , is


[
S
0,1 p^(r+1)(1-p)^(m-r) dp]/[S0,1 p^r(1-p)^(m-r) dp] = (r+1)/(m+1)

Laplace's rule of succession contrasts with that of Thomas Bayes, as reported by his intellectual executor Richard Price. Bayes had considered the case where nothing is known concerning a potential event prior to any relevant trials. Bayes' idea is that all probabilities would then be equally likely.

Given this assumption and told that a black ball has been pulled from an urn n times in unfailing succession, it can be seen that

P[a < p < b] = (n+1) Sa,b p^n dp = b^(n+1) - a^(n+1)

In Zabell (8.0), this is known as Price's rule of succession. We see that this rule of succession of course might (it's a stretch) be of some value in estimating the probability that the sun will rise tomorrow but is worthless in estimating the probability of god's existence.

To recapitulate: If we know there are N black and white balls within and draw, with replacement, n black balls consecutively, there are N-n possible proportions. So one may say that, absent other information, the probability that any particular ratio is correct is 1/(N-n). That is, the distribution of the potential frequencies is uniform on grounds that each frequency is equiprobable.

So this is like asking what is the probability of the probability, a stylization some dislike. So in the finite and infinite cases, a uniform probability distribution seems to be assumed, an assumption that can be controversial -- though in the case of the urn equiprobability has a justification. I am not quite certain that there necessarily is so little information available that equiprobability is the best strategy, as I touch on in "Caution A" below.

Another point is that, once enough evidence from sampling the urn is at hand, we should decide -- using some Bayesian method perhaps -- to test various probability distributions to see how well each fits the data.

Caution A: Consider four draws in succession, all black. If we assume a probability of 1/2, the result is 0.5^4 = 0.0625, which is above the usual 5% level of significance. So are we correct in conjecturing a bias? For low numbers, the effects of random influences would seem to preclude hazarding a probability of much in excess of 1/2. For 0.5^5 = 0.03152, we might be correct to suspect bias. For the range n=5 to n=19, I suggest that the correct proportion is likely to be found between 1/2 and 3/4 and that we might use the mean of 0.625 [a note on that topic will go online soon, which will include discussion of an estimation for n >.= 20 when we do not accept the notion that all ratios are equiprobable].

Caution B: Another issue is applying the rule of succession to a system in which perhaps too much is unknown. The challenge of Hume as to the probability of the sun rising tomorrow was answered by Laplace with a calculation based on the presumed number of days that the sun had already risen. The calculation generated much derision and did much to damage the Bayesian approach(However, computer-enhanced Bayesian methods these days enjoy wide acceptance in certain disciplines.)

The issue that arises is the inherent stability of a particular system. An urn has one of a set of ratios of white to black balls. But, a nonlinear dynamic system is problematic for modeling by an urn. Probabilities apply well to uniform, which is to say, for practical purposes, periodic systems. However, quasi-periodic systems may well give a false sense of security, perhaps masking sudden jolts into atypical, possibly chaotic, behavior. Wasn't everyone marrying and giving in marriage and conducting life as usual when in 2004 a tsunami killed 230,000 people in 14 countries bordering the Indian Ocean? (Interestingly, however, Augustus De Morgan proposed a Bayesian-style formula for the probability of the sudden emergence of something utterly unknown, such as a new species (8a)).

That said, one can nevertheless imagine a group of experts, each of whom gives a probability estimate to some event, and taking the average (perhaps weighted via degree of expertise) and arriving at a fairly useful approximate probability. In fact, one can imagine an experiment in which such expert opinion is tested against a frequency model (the event would have to be subject to frequency analysis, of course).

We might go further and say that it is quite plausible that a person well informed about a particular topic might give a viable upper or lower bound probability for a particular set of events, though not knowledgeable about precise frequencies. For example, if I notice that the word "inexorable" has appeared at least once per volume in 16 of the last 20 books I have read, I can reason that, based on previous reading experience, the probability that that particular word would appear in a book is certainly less than 10%. Hence, I can say that the probability of randomness rather than tampering by some capricious entity is, using combinatorial methods, less than one in 5 billion. True, I do not have an exact input value. But my upper bound probability is good enough.

We consider the subjectivist vs. objectivist conceptions of probability as follows:

Probability Type I 
is about degree of belief or uncertainty.

Two pertinent questions about P1 are:

1. How much belief does a person have that an event will happen within some time interval?

2. How much belief does a person have that an event that has occurred did so under the conditions given?

Degree of belief may be given, for example, as an integer on a scale from 0 to 10, which, as it happens can be pictured as a pie cut into 10 wedges, or percentages given in tenths of 100. When a person is being fully subjective ("guesstimating," to use a convenient barbarism), one tends to focus on easily visualizable pie portions, such as tenths.

The fact that a subjective assessment can be numbered on a scale leads easily to ratios. That is, if one is "seven pie wedges" sure, it is easy enough to take the number 7 and make it a ratio versus the complement of three pie wedges. We then may speak as if there are 3 chances in 7 that our belief is wrong.

Of course, such ratios aren't really any better than choosing a number between 0 and 10 for one's degree of belief. This is one reason why such subjective ratios are often criticized as of no import.

Probability Type II
 then purports to demonstrate an objective method of assigning numbers to one's degree of belief. The argument is that a thoughtful person will agree that what one doesn't know is often modelable as a mixture which contains an amount q and an amount p of something or other -- that is, the urn model. If one assumes that the mixture stays constant for a specified time, then one is entitled to use statistical methods to arrive at some number close to the true ratio. Such ratios are construed to mirror objective reality and so give a plausible reason for one's degree of belief, which can be acutely quantified, permitting tiny values.

P2 requires a classical, essentially mechanist view of phenomenal reality, an assumption that is open to challenge, though there seems little doubt that stochastic studies are good predictors for everyday affairs (though this assertion also is open to question).


1. We don't claim that none of his criticisms are worth anything. Plenty of religious people, Martin Luther included, would heartily agree with some of his complaints, which, however, are only tangentially relevant to his main argument.Anyone can agree that vast amounts of cruelty have occurred in the name of god. Yet, it doesn't appear that Dawkins has squarely faced the fact of the genocidal rampages committed under the banner of godlessness (Mao, Pol Pot, Stalin).

What drives mass violence is of course an important question. As an evolutionary biologist, Dawkins would say that such behavior is a consequence of natural selection, a point underscored by the ingrained propensity of certain simian troops to war on members of the same species. No doubt Dawkins would concede that the bellicosity of those primates had nothing to do with beliefs in some god.

So it seems that Dawkins may be placing too much emphasis on beliefs in god as a source of violent strife, though we should grant that it seems perplexing as to why a god would permit such strife.

Still, it appears that the author of Climbing Mount Improbable (W.W. Norton 1996) has confounded correlation with causation.


2. Properly this footnote, like the previous one, does not affect Dawkins' case against god's existence, which is the reason for the placement of these remarks.
In a serious lapse, Dawkins has that "there is something to be said" for treating Buddhism and Confucianism not as religions but as ethical systems. In the case of Buddhism, it may be granted that Buddhism is atheistic in the sense of denying a personal, monolithic god. But, from the perspective of a materialist like Dawkins, Buddhism certainly purveys numerous supernaturalistic ideas, with followers espousing ethical beliefs rooted in a supernatural cosmic order -- which one would think qualifies Buddhism as a religion.

True, Dawkins' chief target is the all-powerful god of Judaism, Christianity and Islam (Zoroastrianism too), with little focus on pantheism, hentheism or supernatural atheism. Yet a scientist of his standing ought be held to an exacting standard.


3. As well as conclusively proving that quantum effects can be scaled up to the "macro world."
4. The Blind Watchmaker: Why the Evidence of Evolution Reveals a Universe without Design (W.W. Norton 1986).

5. The same might be said of Dembski.

6. A fine, but significant, point: Dawkins, along with many others, believes that Zeno's chief paradox has been resolved by the mathematics of bounded infinite series. However, quantum physics requires that potential energy be quantized. So height H above ground is measurable discontinuously in a finite number of lower heights. So a rock dropped from H to ground must first reach H', the next discrete height down. How does the rock in static state A at H reach static state B at H'? That question has no answer, other than to say something like "a quantum jump occurs." So Zeno makes a sly comeback.

This little point is significant because it gets down to the fundamentals of causality, something that Dawkins leaves unexamined.
7. After the triumphs of his famous theorems, Goedel stirred up more trouble by a finding a solution to Eistein's general relativity field equations which, in Goedel's estimation, demonstrated that time (and hence naive causality) is an illusion. A rotating universe, he found, could contain closed time loops such that if a rocket traveled far enough into space it would eventually reach its own past, apparently looping through spacetime forever. Einstein dismissed his friend's solution as inconsistent with physical reality.

Before agreeing with Einstein that the solution is preposterous, consider the fact that many physicists believe that there is a huge number of "parallel," though undetectable, universes.

And we can leave the door ajar, ever so slightly, to Dawkins' thought of a higher power fashioning the universe being a result of an evolutionary process. Suppose that far in our future an advanced race builds a spaceship bearing a machine that resets the constants of nature as it travels, thus establishing the conditions for the upcoming big bang in our past such that galaxies, and we, are formed. Of course, we then are faced with the question: where did the information come from?

7a. An excellent discussion of this controversy is found in Interpreting Probability (Cambridge 2002) by David Howie.

7.b An entertaining popular discussion is found in The Theory That Would Not Die: How Bayes' Rule Cracked the Enigma Code, Hunted Down Russian Submarines, and Emerged Triumphant from Two Centuries of Controversy (Yale 2011) by 
Sharon Bertsch McGrayne.

8.0 
C.D. Broad and others are cited with respect to this result in Symmetry and Its Discontents (Cambridge 2005) by S.L. Zabell.

7a. An excellent discussion of this controversy is found in Interpreting Probability (Cambridge 2002) by David Howie.

7.b An entertaining popular discussion is found in The Theory That Would Not Die: How Bayes' Rule Cracked the Enigma Code, Hunted Down Russian Submarines, and Emerged Triumphant from Two Centuries of Controversy (Yale 2011) by 
Sharon Bertsch McGrayne.

8.0 
C.D. Broad and others are cited with respect to this result in Symmetry and Its Discontents (Cambridge 2005) by S.L. Zabell.

8.a Zabell offers a proof of De Morgan's formula in Symmetry (above).

8. Unless one assumes another god who is exactly contrary to the first, or perhaps a group of gods whose influences tend to cancel.9. Consider a child born with super-potent intelligence and strength. What are the probabilities that the traits continue?

A. If the child matures and mates successfully, the positive selection pressure from one generation to the next is faced with a countervailing tendency toward dilution. It could take many, many generations before that trait (gene set) becomes dominant, and in the meantime, especially in the earlier generations, extinction of the trait is a distinct possibility.

B. In social animals, very powerful individual advantages come linked to a very powerful disadvantage: the tendency of the group to reject as alien anything too different. Think of the recent tendency of white mobs to lynch physically superior black males. Or of the early 19th century practice of Australian tribesmen to kill mixed race offspring born to their women.


9.0 In another example of Dawkins' dismissive attitude toward fellow scientists, Dawkins writes:

Paul Davies' The Mind of God seems to hover somewhere between Einsteinian pantheism and an obscure form of deism -- for which he was rewarded with the Templeton Prize (a very large sum of money given annually by the Templeton Foundation, usually to a scientist who is prepared to say something nice about religion."

Dawkins goes on to upbraid scientists for taking Templeton money on grounds that they are in danger of introducing bias into their statements.

I have not read The Mind of God: The Scientific Basis for a Rational World (Simon & Schuster 1992), so I cannot comment on its content. On the other hand, it would appear that Dawkins has not read Davies' The Fifth Miracle: the search for the origins and meaning of life (Simon & Schuster 1999), or he might have been a bit more prudent.

Fifth Miracle is, as is usual with Davies, a highly informed tour de force. I have read several books by Davies, a physicist, and have never caught him in duffer errors of the type found in Dawkins' books.

By the way, Robert Shapiro (see footnote 9.1 below) didn't find Hoyle's panspermia work to be first rate, but I have the sense that that assessment may have something to do with the strong conservativism of chemists versus the tradition of informed speculation by astrophysicists. Some of Shapiro's complaints could also be lodged against string theorists.

By the way Nobel laureate biologist Lynn Margolis also denounced Hoyle's panspermia speculations, but, again what may have been going on was science culture clash.

Some of the notions of H and his collaborator, N.C. Wickramasinghe,
which seemed so outlandish in the eighties, have gained credibility with new discoveries concerning extremophiles and the potential of space-borne microorganisms.

9.1 This draft corrects a serious misstatement of Crick's point, which occurred because of my faulty memory.

In Origins: a skeptic's guide to the creation of life on earth (Summit/Simon & Schuster 1986), biochemist Robert Shapiro notes that the probability of such a circumstance is in the vicinity of 10^20 to 1.

Shapiro's book gives an excellent survey of origin of life thinking up to the early 1980s.

Shapiro also gives Dawkins a jab over Dawkins' off-the-cuff probability estimate of a billion to one against life emerging.

10. I have also made more than my share of those.Relevant links:
In search of a blind watchmaker
http://www.angelfire.com/az3/nfold/watch.htmlDo dice play God?
http://www.angelfire.com/az3/nfold/dice.html
Toward a signal model of perception
http://www.angelfire.com/ult/znewz1/qball.html
On Hilbert's sixth problem
http://kryptograff.blogspot.com/2007/06/on-hilberts-sixth-problem.html

The world of null-H

http://kryptograff.blogspot.com/2007/06/world-of-null-h.html
The universe cannot be modeled as a Turing machine
http://www.angelfire.com/az3/nfold/turing.html
Drunk and disorderly: the inexorable rise of entropy
http://www.angelfire.com/az3/nfold/entropy.html

Biological observer-participation and Wheeler's 'law without law'
by Brian D. Josephson
http://arxiv.org/abs/1108.4860

The mathematics of changing your mind (on Bayesian methods)
by John Allen Pauloshttp://www.nytimes.com/2011/08/07/books/review/the-theory-that-would-not-die-by-sharon-bertsch-mcgrayne-book-review.html?_r=2&pagewanted=all

Where is Zion?
http://www.angelfire.com/az3/newzone/zion1.html


Other Conant pages
http://conantcensorshipissue.blogspot.com/2011/11/who-is-paul-conant-paul-conants-erdos.html
A Dawkins link
http://users.ox.ac.uk/~dawkins/
Draft 08 [Digression on a priori probability added]
Draft 09 [Correction of bad numbers plugged into a probability example in the digression]
Draft 10 [Digression amplified]
Draft 11 [Digression revised and again amplified]
Draft 12 [Digression example clarified]
Draft 13 [Correction in digression due to comment by Josh Mitteldorf]
Draft 14 [Digression amplified]
Draft 15 [Digression amplified and made into an appendix]





>/dov>

 


Monday, November 3, 2014

U.S. twisted facts to pin anthrax attacks on ill scientist

A new look at the case against Bruce Ivins
The 2001 Anthrax Deception -- The Case for Domestic Conspiracy (Clarity Press, 2014) is a new book by Graeme MacQueen, a retired religion professor. Thoughtful people are sure to be profoundly affected by a reading of his deft analysis.
I came across his book while researching the article below. I have not so much focused on conspiracy as on examples of grotesque misrepresentations by federal lawyers and others in league with them. I wanted to look at concrete examples of the government casting events in a false light, but that doesn't mean I don't consider conspiracy as something the FBI seems to have been at pains to avoid investigating.


By PAUL CONANT
Conant is a former metropolitan New York newspaperman.
Permission is granted to reproduce this article in whole or in part, with or without attribution.

The Justice Department seriously distorted the evidence it used to pin all blame for the 2001 anthrax attacks on a mentally ill scientist, a new review of federal documents shows.

In many instances in the federal case against Bruce E. Ivins, the meanings given to facts presented by federal authorities turn out to stray far from reality or to be highly ambiguous. The government bent the usual rules of evidence and logic wildly as it tried to make a case that the attack anthrax could only have come from a flask, numbered RMR-1029, "exclusively" controlled by Ivins.

The U.S. government has released two major reports on the 2001 anthrax attacks: A Justice Department "investigative summary" and a psychiatric evaluation of the purported killer written under the leadership of a longtime FBI psychology consultant. In addition, depositions and excerpts of depositions from a civil suit brought by the widow of the first anthrax fatality have been released under court order. As has previously been reported, the depositions of Ivins's coworkers show that they strongly disagree with the Justice Department theory that Ivins was guilty of single-handedly carrying out the attacks. (See ProPublica, PBS's Frontline and McClatchy Newspapers.)

A bit of background
The conclusions drawn from the scientific work performed by the FBI were strongly criticized by a National Academy of Sciences committee in 2011. The panel noted that though the FBI formally answered all questions, the bureau often rebuffed it with uninformative bureaucratic responses. The scientists added that, at the last minute when the bureau sensed the direction of the panel's upcoming report, the bureau suddenly reported that there was much classified information germane to the investigation and that a secret committee of White House appointees and scientists with high-level secrecy clearances had been quietly steering the FBI investigation.

The NAS panel decided against trying to review the national security data brought in at the last minute. The panel added that the FBI also suddenly introduced material supposedly pointing to potential al Qaeda involvement, but the panel decided that while authorities were welcome to seek more evidence in that matter, the rushed al Qaeda question was irrelevant to the panel's findings about the scientific methods used to directly link the attack anthrax to Ivins. The FBI had been led to the U.S. military early in the investigation because the attack spores showed that they came from the Ames strain, which was known to be used by the military in its biodefense work.

The problematic nature of the FBI's scientific work is buttressed by this writer's review of the investigative summary, which shows instances of trickery and serious distortion in its attempt to show that a pattern of circumstantial evidence strongly implied that Ivins, a federal anthrax scientist at the Army's Fort Detrick in Maryland, was solely responsible for the anthrax attacks.

Additionally, this writer's review of the psychiatric report written for the FBI, shows that its narrative portion differs greatly on an important incident from the Justice Department summary. None of the psychiatric review panelists was able to go on the record in response to queries from this writer. Other documents reviewed include transcripts of two FBI science briefings for the press and a number of released FBI reports.

The original Justice Department report was issued on Feb. 19, 2010, along with a group of FBI documents, in accord with a Freedom of Information Act request that was complied with at the formal closing of the anthrax case. However, it is apparent from the form of the summary that the document was intended for public consumption.

This analysis does not claim to exonerate Ivins. However, the idea that he could have acted alone has been vigorously challenged by his scientific colleagues working at the U.S. Army Medical Research Institute of Infectious Diseases (USAMRIID) at Fort Detrick.

The number of peculiarities with respect to the anthrax case is quite large, and no attempt has been made here to cover all bases.

This reporter notes that since he began researching this report in August 2014, the FBI has disabled its link to the Justice Department summary that appeared on the FBI's Amerithrax page.

This reporter has reviewed all testimony available to the public from depositions of Ivins's coworkers in a case brought in a Florida court against the Justice Department by Maureen Stevens, widow of the first anthrax fatality, Robert Stevens. The lawsuit was eventually settled after the Justice Department's criminal division forced the civil division to accept its claim that Ivins had had access to equipment for making the attack anthrax. The civil division had argued that, because there was no concrete evidence that the anthrax attacks had originated at Ivins's Army workplace, the U.S. government was not liable for a negligence damage claim.

The incidents cited below do not necessarily mean that the Justice Department and psychiatric reports are entirely inaccurate, but do show that one should beware any of their claims.

A slip of the zip
Item from the summary:

"On November 1, 2007, the Task Force executed these search warrants, which resulted in the recovery of numerous items of interest, including a large collection of letters that Dr. Ivins had sent to members of Congress and the news media over the previous 20 years -- including one sent to NBC News in 1987 at the same address for NBC used on the Brokaw letter."

The implication here is that it is odd that the NBC address on an anthrax letter matched an address used by Ivins decades previously. However, NBC has had the same address at Rockefeller Center since Rockefeller Center was built.

When checked on Sept. 4, 2014, the NBC Studios address, on the Rockefeller Center web site was

30 Rockefeller Plaza
(Entrance on 49th Street between Fifth & Sixth Avenues)
New York, NY 10012

The zip code is incorrect. The proper code is 10112.

(The page with that address has been taken down since Sept. 4 in an overhaul of the Rockefeller Center web site. Here is a URL to a partial copy of the deleted page:

http://sandeeee.blogspot.com/2014/10/partial-copy-of-rockefeller-centers-nbc.html .)

However, if one had obtained the address via the NBC News web site "contact" page, the correct address was (as of Sept. 4, 2014) given:

NBC News, 30 Rockefeller Plaza, New York, N.Y. 10112.

As the deleted Rockefeller Center page said, NBC has been at Rockefeller Center since the center was built. "No major tenant has been here longer, occupied more space, or become so widely identified with Rockefeller Center than NBC" which opened its radio studios in 1933.

Nationwide postal zip codes date to the 1960s.

Aside from the conflicting zip codes, one other difference is that the attack letter uses "NBC TV," as opposed to "NBC News," in the address but this seems barely relevant.

So, the address that Ivins used in the early eighties would have been no different from the one the anthrax mailer used in 2001, though a number of correspondents in 2001 may have used the incorrect zip code given by NBC (yet it is not evident how long the wrong code had been up). But that is not very informative, as the attack mailer could easily have gone to the NBC News contact page to get the address.

If there were substantive differences, the summary does not disclose them.

So the insinuation is absurd. There is no strange coincidence between an old mailing address used by Ivins and the NBC anthrax letter.

Email doublethink
The summary relates that in an Oct. 3, 2001 email from Ivins to a former coworker (Mara Linscott), Ivins talked about biowar scenarios but "the next day Ivins did not mention these more plausible possibilities" in an email to a CDC colleague, an email the summary portrayed as a sinister ploy.

A CDC website statement relates that on Oct. 4, 2001, the CDC "confirmed the first bioterrorism-related anthrax case identified in the United States in a resident of Palm Beach County, Florida." The CDC was initially highly uncertain as to whether a bioterror attack had occurred. Just because Ivins was aware of bioterror scenarios doesn't mean he would jump to the conclusion that the Florida case had resulted from bioterrorism.

Ivins's email to the CDC was fired off as soon as initial reports came in of Stevens's condition. But, he was writing in a professional capacity, and possibly was simply being cautious. The previous email had been sent in an informal vein to a friend.

The summary reprints the Oct. 3 email in full but paraphrases the scientist's email to the CDC selectively.

From the summary (numbering added):

"When Robert Stevens became the first victim of the anthrax attacks, Dr. Ivins sent an unexplainable [1] e-mail to a contact at the CDC on October 4, 2001, the day after [2] Stevens was diagnosed with inhalation anthrax. Dr. Ivins, one of the nation's foremost anthrax scientists, speculated that Mr. Stevens's infection could have been the result of Stevens drinking infected creek water. The proffered explanation was impossible because the anthrax had been inhaled [3]. Alternatively, he proposed to the CDC that Stevens could have contracted the disease from infected alpaca used in wool socks or a sweater [4]. Both a renowned microbiologist at another lab and a scientist at USAMRIID found these suggestions absurd. The microbiologist at the other lab described them as "laughable," and the USAMRIID scientist called them 'fishy, any reasonable scientist would say this doesn't make sense'." [5]

A footnote concedes that another anthrax researcher pointed out that everyone was wondering whether the microbe came from the environment, though no one had considered the idea of infection via ingestion of water.

Here is the Oct. 4 letter obtained from page 487 of Ivins's 2001 emails reproduced at ProPublica's Anthrax Files.

From: Ivins, Bruce E. Dr. USAMRIID
To: REDACTED
Subject: Florida case(?)
Date: Thursday, October 04, 2001 9:57:19 PM

Hi, REDACTED

I just heard this evening (and read over internet news) that a case of pulmonary anthrax may have been identified in Florida. Is this true, or is this just hysteria? The only Florida strain of B. anthracis that I am familiar with is V770, which is the parent of V770-NP1-P, the strain used in production of the human anthrax vaccine. (I believe that V770 was originally isolated from a cow in Florida in the early 1950s.) The article said that this person was an "Outdoorsman," and had drunk water from a creek in North Carolina. If he really does have anthrax, could he have gotten it this way, or did he get it by tromping around some dusty field area. (Has North Carolina been dry this summer?) I know that in the wild in Africa, animals are supposed to be able to get it from water holes by stirring up spores and presumably ingesting them and possibly inhaling them as an aerosol. Could this have happened? What if the animal had died upstream and the stream was contaminated? (Drinking from a stream or creek without boiling or purifying the water first is an invitation to intestinal disease or parasites, but have any other human anthrax cases been documented from people drinking contaminated water?)

You called me several times in the recent past REDACTED with regards to another anthrax issue. If there's anything I can help with here (if you or coworkers are involved) please let me know. I don't know if there's anything I can do, but I'm certainly willing to provide whatever informational assistance I can. (I would have been less surprised if the Florida man had been hunting deer in Texas, where there is identifiable anthrax. I don't recall North Carolina as having ideal soil for preservation of anthrax spores or for anthrax cycling of spore-vegetative cell-spore-vegetative cell etc., but I suppose there could be areas of higher soil calcium and alkalinity.)

Anyway, please don't hesitate to give me a call if there's anything I can do. We are currently testing the virulence (in immunized and unimmunized guinea pigs) of B. anthracis strains from all over the world, including China, and we've come up with some very interesting differences in virulence among the strains.

Take care of yourself, REDACTED

- Bruce

[1] After reading the email, would you call it unexplainable?

[2] The CDC says that it first confirmed that Stevens had inhalational anthrax on Oct. 4, the day Ivins wrote the email, not the day before. Hence, the dust had not yet settled and Ivins may well have been unsure the diagnosis was realistic.

[3] It's clear that he seems to distrust the inhalation diagnosis, though he is willing to entertain various possibilities -- possibilities he is thinking about in light of the news account he had read.

[4] The "alternative" explanation does not appear in the email and is not documented. However, cutaneous (infected skin lesion) anthrax is known as a disease of wool workers, and he may have wondered whether there was a slight, but not impossible, chance of transmission via infected wool clothing.

[5] It is apparent that when scientists were asked about Ivins's conjectures, they weren't privy to what he actually wrote. Even when it comes to the wild idea of anthrax contamination of drinking water, Ivins only throws out a question, which should be seen in context of his having heard of animals contracting anthrax at water holes, where they kicked up spores from the ground.

However, the Justice Department says, "This email to the CDC, fishing for information, is additional evidence of his guilty conscience."

Even if Ivins was fishing for information, is that really evidence of a guilty conscience? After all, his field was anthrax research.

No news is bad news
The summary bills another Ivins email as indicative of inside knowledge of the anthrax attacks.

On Sept. 26, 2001 Ivins wrote a former coworker:

"Of the people in my 'group' everyone but me is in the depression/sadness/flight mode for stress. I'm really the only scary one in the group. Others are talking about how sad they are or scared they are, but my reaction to the WTC/Pentagon events is far different. Of course, I don't talk about how I really feel with them -- it would just make them worse. Seeing how differently I reacted than they did to the recent events makes me really think about myself a lot. I just heard tonight that Bin Laden terrorists for sure have anthrax and Sarin gas. You [REDACTED]."

The summary ominously notes that the public did not become aware of the first anthrax mailings until early October, about a week after this email. The email was sent six days after attack letters were postmarked in New Jersey.

The summary adds that in that same email, Ivins wrote: "Osama Bin Laden has just decreed death to all Jews and all Americans" -- language it held to be similar to the text of the anthrax letters postmarked two weeks later warning "DEATH TO AMERICA," "DEATH TO ISRAEL."

But, a point the summary omits is that there was much discussion on the internet and via other media about the possibility that bin Laden, or al Qaeda, possessed such weaponry. And, the public had been told of bin Laden's actions against Israel and his 1998 fatwa against Americans, saying they were permissible targets for attacks. In fact, the government's conspiracy theory concerning the 9/11 attacks hinges on bin Laden's death decree.

On Sept. 12, the atmosphere was set by former Defense Secretary William Cohen and CIA Director George Tenet.

A Sept. 12 report in the Guardian newspaper notes that Tenet told Americans that bin Laden had in 1998 served notice that any American was a legitimate target for attack. That same article asserts -- probably incorrectly -- that Sarin nerve gas was among "the many sinister components" of bin Laden's arsenal.

On the evening of Sept. 12, Cohen told CBS News that he fully expected there to be a full-scale deployment of biological and chemical "weapons of mass destruction" very soon. This reinforced his earlier statements as Clinton's Pentagon chief that a five-pound bag of anthrax bacteria in the hands of terrorists would likely cause the deaths of hundreds of thousands of Americans.

On Sept. 16, Defense Secretary Donald Rumsfeld told Fox News: "What they can do is use these asymmetrical threats of terrorism and chemical warfare and biological warfare and ballistic missiles and cruise missiles and cyber attacks."

On Sept. 19, a British TV station followed up another Telegraph report, and tied bin Laden, Sarin and anthrax together in one report.

http://www.news24.com/xArchive/Archive/Germ-warfare-next-big-threat-20010917

A Sept 24 Time magazine article on terrorism via unconventional weapons discusses anthrax, Sarin and bin Laden, though the writer does not suggest bin Laden had access to such weapons.

http://content.time.com/time/nation/article/0,8599,176066,00.html

On Sept. 26, Britain's Telegraph told of a bin Laden unit's plan to use Sarin nerve gas.

http://www.telegraph.co.uk/news/worldnews/asia/afghanistan/1340692/Bin-Laden-British-cell-planned-gas-attack-on-EU-Parliament.html

Though Ivins may not have seen the British reports, this type of information was picked up and circulated extensively on the internet and in American media.

On Sept. 26, columnist Maureen Dowd of the New York Times wrote, “Americans are now confronted with the specter of terrorists in crop dusters and hazardous-waste trucks spreading really terrifying, deadly toxins like plague, smallpox, blister agents, nerve gas and botulism." She added that women she knew "share information on which pharmacies still have Cipro, Zithromax and Doxycycline, all antibiotics that can be used for anthrax, the way they once traded tips on designer shoe bargains."

On Sept. 26, Bill Gertz of the Washington Times reports that al Qaeda was attempting to acquire Sarin and anthrax.

"Intelligence officials say classified analysis of the types of chemicals and toxins sought by al Qaeda indicate the group probably is trying to produce the nerve agent Sarin, or biological weapons made up of anthrax spores," Gertz wrote. "Sarin can be produced from the components used to make fertilizer and kills by disrupting the central nervous system. Anthrax is a highly lethal biological weapon that causes death after spores are ingested."

Gertz writes for the Washington Times, which still circulates in the Maryland suburbs of Washington, meaning that that story could well have been read by Ivins or a coworker.

It is true that none of these reports asserts that bin Laden definitely had Sarin and anthrax, but many casual listeners or readers would have assumed that bin Laden did have such capabilities. Even scientists can make rash assumptions when they are not focusing carefully.

Though the reports cited here mostly do not refer to bin Laden's death fatwa against Americans, it is safe to say various commentators had mentioned it. And it is quite plausible that Ivins heard a compressed version of Gertz's story from broadcast news or read a garbled account on the internet. Certainly there is nothing unlikely about someone rewriting the Gertz story and adding to it the bin Laden fatwas against Americans and Jews.

Another possibility is that Ivins overheard office scuttlebutt concerning the Gertz story or that he somehow became aware of a Pentagon threat analysis of al Qaeda's purported biowar potential. After all, he worked for the Pentagon.

Of course, it is possible Ivins's email was criminally anticipatory, but not only is there no evidence of that, there is plenty of evidence that such an awareness could have been picked up from news accounts.

Lies, damned lies and polygraphs
The summary relegated the fact that Ivins had passed a polygraph examination to a footnote.

"In some sense, Dr. Ivins’s efforts to stay ahead of the investigation began much earlier. When he took a polygraph in connection with the investigation in 2002, the examiner determined that he passed. However, as the investigation began to hone in on Dr. Ivins and investigators learned that he had been prescribed a number of psychotropic medications at the time of the 2002 polygraph, investigators resubmitted his results to examiners at FBI Headquarters and the Department of Defense Polygraph Institute for a reassessment of the results in light of that new information. Both examiners who independently reassessed the results determined that Dr. Ivins exhibited “classic” signs of the use of countermeasures to pass a polygraph. At the time the polygraph was initially examined in 2002, not all examiners were trained to spot countermeasures, making the first analysis both understandable under the circumstances, and irrelevant to the subsequent conclusion that he used countermeasures."

Jeff Stein of the Washington Post wrote in February 2011 that the the FBI's case file contradicts the summary footnote.

Ivins “did not research anything about the test, to include ways to defeat its accuracy,” the FBI’s 2002 report on Ivins says.

“Likewise, he did not take any steps to defeat the tests [sic] accuracy or use countermeasures," the FBI report says. "In fact, IVINS stopped taking his anti-depression/anti-anxiety medication 48-72 hours before the polygraph, and he offered to provide blood and/or urine specimens at the time of the test to prove he was not medicated.”

Links to the report cited by Stein are now dead.

As Stein observes, "An obvious question might be whether, of the many other possible suspects who were eliminated, any were eliminated solely on the basis of polygraph examinations."

http://voices.washingtonpost.com/spy-talk/2011/02/ivins_cases_inconvenient_quest.html

The polygraph method has been the subject of considerable controversy, but a National Academies of Science panel found that such examinations in the hands of skilled examiners are often effective, though far from perfect. Still, doubts remain about whether examiners know how to detect countermeasures and about the notion that psychiatric drugs are useful in that regard.

https://antipolygraph.org/blog/2010/02/20/doj-rationalizes-away-polygraphs-failure-to-catch-alleged-anthrax-mailer-bruce-ivins/

A few more points:

A heavily redacted Dec. 8, 2004, FBI report shows that, despite reservations, either Ivins or an associate agreed to submit to an FBI polygraph exam. Now, supposing the report refers to an Ivins associate, one still faces the question of why the FBI did not polygraph Ivins in 2004, when he had come under new scrutiny.

http://vault.fbi.gov/Amerithrax

In April 2010, ProPublica reported that another Fort Detrick anthrax scientist, Henry S. Heine, said FBI agents gave him a polygraph exam and took statements from him several times between 2001 and 2003. Yet the summary implies that the bureau did not polygraph Ivins at all, but, rather, relied on Army polygraphers. So then, what stopped the bureau from relying on Army polygraphs of Heine?

So, aside from passing an Army polygraph, either Ivins also passed an FBI polygraph test -- with the government falsely implying that the FBI had not polygrapghed Ivins -- or the FBI was waved away from polygraphing him. As a Pentagon employee with a security clearance, Ivins's ability to refuse further polygraphing was limited, which was especially the case prior to his being officially considered a suspect.

In June 2002, the Hartford Courant noted that the FBI intended to interview and conduct polygraph tests of more than 200 former and current employees of Fort Detrick and the Army's Dugway Proving Grounds in Utah, where biowar anthrax tests had been carried out. An FBI source told the Courant that there were only about 25 people from Dugway on the list of those to be interviewed and tested, meaning most scientists to be scrutinized were from Fort Detrick.

Steven Hatfill, a former Fort Detrick scientist whom the FBI once considered a "person of interest" was among those polygraphed by the FBI.

So again, what really caused the FBI to seemingly give Ivins a waiver from polygraph testing?

It is hard to answer such questions because, as bioweapons expert Martin Furmanski observed concerning the released FBI files:

"Often the redactions are quite extensive, involving most or all of a paragraph. Generally, these carry the ‘personal privacy’ exemption notations, which seems unlikely. In some cases the redacted material can be reasonably surmised to be of scientific character from the context and the unredacted portions."

Furmanski, a Stanford University professor with degrees in pathology and microbiology, examined more than 2000 pages of FBI documents.

Despite his conclusion that Fort Detrick had possessed the equipment needed to make sufficient quantities of anthrax powder for the letter attacks, Furmanski noted, "There is a larger issue regarding the robustness of the material in the FBI FOIA documents. Although extensive, they are a selection of a much larger archive, estimated to be over 50,000 pages."

Furmanski, in his 2010 analysis for the Federation of American Scientists, said a fermenter at Ivins's work place was large enough to have produced in two batches enough anthrax for the attacks.

But in 2011, ProPublica and its partner news organizations reported that Gerard P. Andrews, a pathologist and Army officer who headed the bacteriology division where Ivins worked, described the division's fermenter as “indefinitely disabled,” with its motor removed. Assuming the Andrews statement is accurate, someone would not only have had to get the fermenter running, but to have removed and hidden the motor, at least twice. There is no indication that Ivins was skilled in such matters. So acceptance of the FBI theory tends toward the conclusion that Ivins very likely would have had confederates.

The FBI made no attempt to give a detailed explanation of how the powders were prepared, and so the public is left with unanswered questions about other fermenters at Fort Detrick and Ivins's access to them.

At any rate, in 2012 an NSA whistleblower, Russell Tice, revealed to Newsweek that if one has used trickery on a control question, then when the key questions are asked, the subject can daydream about something pleasant. It seems plausible that daydreaming might be easier to do if one is using psychotropic drugs.

http://www.usnews.com/news/blogs/washington-whispers/2012/09/25/nsa-whistleblower-reveals-how-to-beat-a-polygraph-test

It cannot easily be ruled out that Ivins had learned how to beat the test from associates in the Pentagon. Or, is it possible he was "passed" by confederates, which is another way of beating such tests?

One online report, quoting FindLaw.com, says that psychopaths and sociopaths (who lack empathy with other people) "may be excluded from polygraphs as the disorders reflect individuals who can control their emotional responses and do not exhibit a conscience."

A reader could get the impression -- though the summary is not explicit -- that Ivins's mental illness may have contributed to his ability to pass the polygraph test. In an acute paranoid schizophrenic episode, it is conceivable that an "alternate" personality could emerge which is capable of turning to murder. Later, when the "alter ego" has re-submerged, the "real Bruce Ivins" would sincerely believe that he had had nothing to do with the attacks.

For example, among the many personal emails he sent to his former coworkers Mara Linscott and Patricia Fellows, is this poem:

So now, please guess who
Is conversing with you.
Hickory dickory Doc!
Bruce and this other guy, sitting by some trees,
Exchanging personalities.
It’s like having two in one.
Actually it’s rather fun!

The summary adds:

"In the weeks that followed this e-mail, Dr. Ivins continued to discuss his 'terrifying' mental health issues, telling Former Colleague # 1 (Mara Linscott) in an e-mail on July 4, 2000: 'The thinking now by the psychiatrist and the counselor is that my symptoms may not be those of depression or bipolar disorder, they may be that of ‘Paranoid Personality Disorder'."

Ivins also wrote that he was seeking help, fearing the "terrible things some paranoid schizophrenics have done."

Under pressure from the Justice Department, the civil depositions of Linscott and Fellows were sealed, meaning there is no way at present to compare government claims with the recollections of the two women.

The psychiatric panel observed that "Ivins's writings referred, at times explicitly, to depression, paranoia, and delusional thoughts; described a sense of observing himself from the outside (depersonalization); talked and wrote about there being two Bruces (dissociation); described being harmed by the rejection of KKG [a sorority] members; and worried about becoming, and being, schizophrenic."

Yet, the psychiatric panel cited neither schizophrenia nor dissociative identity disorder (in which "alter egos" emerge) in its diagnosis, but found that Ivins lacked empathy (a problem associated with "psychopaths") and suffered from "personality disorder not otherwise specified, with narcissistic and antisocial features" which he medicated via drug and alcohol abuse.

The government may have had a problem with the "murder-by-alter-ego" idea, as such events are not well documented in the literature and the federal prosecutors may have been reluctant to set a precedent. Still, defense lawyers have tried to use the multiple personality defense in murder cases.

For example, lawyers for Richard Angelo, the "Angel of Death" nurse, fought to prove that Angelo suffered from dissociative identity disorder, which meant he would dissociate himself completely from the crimes he committed.

The lawyers fought to prove this theory by introducing polygraph exams which Angelo had passed during questioning about the murdered patients, it has been reported. The judge however, would not allow the polygraph evidence.

Considering the emphasis put on his mental stress and neurotic behavior before the anthrax attacks, one wonders how Ivins would not have panicked at the possibility he might flub his polygraph -- countermeasures or no -- and draw investigators down on his head. But if an alternate personality had been in control during key periods, Ivins may well have passed a polygraph test when that personality was submerged.

However, such a scenario has many difficulties, including a proposed ability to switch on the murderous "alter ego" during contacts with confederates.

Also, one should not automatically dismiss the possibility that Ivins's emails had been intercepted by security agents in 2000 and brought to the attention of politically powerful persons in early 2001 who were seeking war against Iraq and other Mideastern nations, as is documented in many places, including here:

http://paulpages.blogspot.com/2011/11/fox-news-trumpet-of-israels-hard-right.html

In such a scenario, Ivins would have been used as a witting or unwitting pawn, or perhaps as a potential "fall guy." How else does one account for the government notion that Ivins was guilty and also for his colleagues' assertion that Ivins could not have escaped notice while making the large amount of anthrax powders used in the mailings?

Shortly after the 9/11 attacks, Seymour M. Hersh, a highly regarded investigative reporter, wrote in the New Yorker magazine:

"Many of the investigators believe that some of the initial clues that were uncovered about the terrorists’ identities and preparations, such as flight manuals, were meant to be found. A former high-level intelligence official told me, 'Whatever trail was left was left deliberately—for the F.B.I. to chase.'

"In interviews over the past two weeks, a number of intelligence officials have raised questions about Osama bin Laden’s capabilities. 'This guy sits in a cave in Afghanistan and he’s running this operation?' one C.I.A. official asked. 'It’s so huge. He couldn’t have done it alone'."


What Went Wrong
The New Yorker, Oct. 8, 2001 issue
http://www.newyorker.com/magazine/2001/10/08/what-went-wrong

Also see,
9/11 probers skipped key forensic tests
http://www.prisonplanet.com/911-probers-skipped-key-forensic-tests.html

An argument positing federal clandestine operations is made by Graeme MacQueen, a retired McMaster University professor of peace studies, in The 2001 Anthrax Deception -- The Case for Domestic Conspiracy (Clarity Press, 2014). MacQueen, who specialized in Buddhist studies, points out that curious linkages between the alleged al Qaeda hijackers and the anthrax attacks look as though they were clues planted to validate a narrative blaming bin Laden -- along with his supposed sponsor, Saddam Hussein -- for the anthrax attacks. The FBI was initially inclined to blame al Qaeda, but the quality of the anthrax sent to the Senate pointed to a military program and the bureau was forced to change direction.

Letters with bogus anthrax were sent from St. Petersburg, Fla., a 50-minute drive from Sarasota, where the reputed hijackers paid visits to a mysterious Saudi family. The reputed hijackers trained at a flight school in Venice, Fl.

http://www.heraldtribune.com/article/20110908/ARTICLE/110909586

Among the letters sent from St. Petersburg to news media was one to Judith Miller, a reporter for the New York Times, and another to Howard Troxler, a columnist for the St. Petersburg Times. Troxler, whose columns also appeared in the Tampa Bay Times, and Miller both opened their letters after the first anthrax case had become known. But a fuzzy St. Petersburg Times image appears to show a postmark date of Oct. 1, before attacks had become known.

The St. Petersburg Times reported that the cryptic letter to its columnist misspelled Troxler's name and had little punctuation. According to the paper, it said:

"Howard Toxler ... 1st case of disease now blow away this dust so you see how the real thing flys. Oklahoma-Ryder Truck! Skyway bridge-18 wheels."

Less information is available about the Miller letter.

In October 2011, Miller told a CNN caller, "Well, the letter was handwritten. And there was no return address. And there were misspellings. It was a threatening letter. And the Times has decided that I should only tell you that it contained a threat to the Sears Tower and to President Bush. It was a crude letter. That is all I can say."

Google searches suggest that she hasn't since revealed whether the envelope's address was similar to the attack letters or the Troxler letter or whether she has seen the envelope and letter since the FBI took custody of them. The FBI has not released copies of the letters or envelopes sent to Troxler and Miller.

A query was sent through a close associate of Miller asking her about the threat letter, but no response was received. (Miller's apparent reticence should not be taken as indicative of any violation of U.S. law.)

It is noteworthy that the Troxler letter's address is written in a blocky style very similar to, but not in the same handwriting as, the attack letters. It seems plausible that the Miller letter followed suit. Ivins is unlikely to have been able to mail the Florida letters.

Another theory is that the Obama White House did not want the investigation to dog the Obama presidency, as it had the Bush presidency, and had pressured the attorney general, Eric Holder, and the FBI director, Robert Mueller, to wrap up the investigation quickly. In an attempt to justify closure of the case, the thinking goes, a politicized Justice Department report was issued. Despite an important deviation from the Justice Department account, the behavioral analysis's narrative section reads as though it were written by a Justice Department functionary.

Though the various subsidiary points raised above are worth some thought, the main issue is that the summary gives a highly deceptive statement about the Ivins polygraph matter.

Now you see it, now you don't
From the psychiatric report, dubbed "Report of the Expert Behavioral Analysis Panel":

"The agent then asked Dr. Ivins whether that was all the anthrax he had. It was, Dr. Ivins said. The agent then specifically asked about the RMR-1029 flask.

"Dr. Ivins walked back into the cooler and returned with a standard, one-liter vessel, and labeled with a black Sharpie. The anthrax inside was in liquid form. Unlike the two samples he had readily volunteered, Dr. Ivins had held back the RMR-1029 — surrendering it only when specifically requested.

"Later, Dr. Ivins’ technicians reported that they had never seen the flask. He had been its sole custodian and presumably had kept it concealed in the cooler.

"Soon, anthrax from the seized RMR-1029 flask was tested with the more sophisticated assay techniques that scientists had been developing. The question was whether the anthrax from the flask would show the same genetic markers as the anthrax used in the mailings."

Why this incident is problematic is that the story is corroborated neither by the investigative summary nor pertinent FBI files.

The summary reads: "So, in April 2004, the flask containing RMR-1029, along with approximately 20 other samples of Ba [Bacillus anthracis] which Dr. Ivins maintained in his lab, were secured by the FBI in such a manner that Dr. Ivins no longer had access to them. In June 2004, those samples were removed from Dr. Ivins’s lab and transferred to the custody of the FBI."

A federal affidavit for a 2007 search of Ivins's property discusses the April 2004 search. It says nothing about the alleged blatant evasion by Ivins.

"On December 12, 2003, an FBI Special Agent accompanied Dr. Ivins into Suite B3 at USAMRIID and identified additional Ames samples of Dr. Ivins's and others that had not been submitted as part of the above mentioned response. Dr. Ivins submitted slants [test tubes holding biological material] prepared from the newly identified samples to the FBIR [FBI repository] on April 7, 2004

"On the afternoon of April 7, 2004, an FBI Special Agent accompanied Dr. Ivins into Suite B3, and seized the original samples Dr. Ivins had used to prepare the slants submitted to the FBIR earlier that day. Additionally, the Agent seized the RMR-1029 flask itself. All of the samples were secured in the B3 walk-in cold room within a double-locked safe, and sealed with evidence tape until such time that they could be transported to the Navy Medical Research Center (NMRC), which was under contract by the FBI."

The affidavit, as of Oct. 26, 2014, is found at

http://www.fbi.gov/about-us/history/famous-cases/anthrax-amerithrax/07-524-M-01%20Attachment.pdf

There is no mention of Ivins attempting to withhold the critical flask from an FBI agent during the search of the hot suite.

ProPublica's Anthrax Files site has a document (pages 73 to 79 in "The FBI Bruce E. Ivins investigation") discussing the search conducted in early April 2004 which does not verify the psychiatric narrative's account.

http://projects.propublica.org/docdiver/documents/73700-c1-fbi-bruce-e-ivins-investigation-sections

ProPublica's research yielded nothing like the tale in the psychiatric report.

ProPublica:

"In early April 2004, Ivins was asked to help the FBI collect a complete set of cultures from Fort Detrick. Earlier, FBI agents had found 22 vials of anthrax that hadn't been turned over. On April 6, a lab assistant found a test tube of material that appeared to have been removed from Ivins’ flask.

"The assistant gave the germs to Henry Heine, a colleague of Ivins' who happened to be in the building. Heine said he checked with Ivins, who told him to send a sample from the tube to the FBI. In an April 6 email, Ivins thanked Heine, acknowledging that the anthrax 'was probably RMR-1029.'

"Heine views this moment as a sign of his colleague’s innocence, pointing out that Ivins willingly turned over a sample he thought had originated from his flask. In an interview, Heine said there were no cameras in the building, that FBI agents weren't monitoring the search and that Ivins easily could have prepared the sample himself and tampered with the evidence.

"A day later, investigators seized Ivins’ flask, locking it in a safe double-sealed with evidence tape.

"What happened next raises questions about the reliability of the FBI’s method for detecting morphs [genetic markers]. The bureau separately ordered tests on Heine’s sample and a second one drawn from the same test tube. Records show conflicting results, one negative and one positive.

"Does this mean the FBI’s tests for morphs were unreliable?

"An FBI scientist said Ivins had told investigators the anthrax in the refrigerator had been diluted. This perhaps made the morphs undetectable in testing, said the scientist, who was made available to discuss the matter on the condition of anonymity.

"Heine said the sample he sent wasn't diluted.

"'We can only go by what Bruce told us,' the FBI scientist replied.

"Heine said he sent the FBI at least two additional samples from RMR-1029 that Ivins had shared with him. He said the FBI later told him both had tested negative for the morphs. The FBI scientist said the bureau could find no record of this."

As discussed below, a Navy laboratory had measured the spore density in the seized anthrax, and obtained a count consistent with dilution. However, Ivins showed an FBI scientist that that the Navy measurement was unlikely.

On such an important matter as pronounced evasive behavior, the psychiatric report does not cite its source of evidence, whether that be an FBI document or an interview with the FBI agent who is said to have reported Ivins's suspicious behavior. In fact the redacted online report gives few if any citations for "facts" reported in its narrative.

The psychiatric report was published in 2011 by Research Strategies Network (RSN) under the leadership of Gregory B. Saathoff, a University of Virginia psychiatrist who has been an FBI behavioral consultant since 1996. The report's authors were given the mission of reviewing decades' worth of Ivins's psychiatric files and coming up with a behavioral analysis. The report was originally held under wraps, but eventually was released to the public.

Saathoff is currently RSN's president and treasurer.

Among RSN's reviewers were two American Red Cross officials with no record of mental health professionalism. Gerald M. DeFrancisco is head of Red Cross humanitarian services, who also sits on RSN's board, and Joseph C. White is a Red Cross senior vice president. Presumably, justification for their inclusion was the fact that Ivins had, late in his career, joined the Red Cross as a volunteer. Retention of these men demonstrates the political nature of the report.

Another reviewer is a fellow University of Virginia professor, Christopher P. Holstege MD, who shares with Saathoff management responsibilities at an outfit called the Critical Incident Analysis Group

Among luminaries on RSN's board are Edwin Meese III, President Ronald Reagan's attorney general, and Charles S. Robb, the former Virginia governor and U.S. senator. Meese also sits on the board of the critical incident group.

On Sept. 4, 2014 this reporter asked most RSN reviewers (some had no publicly available email addresses) these questions:

1. What did your contribution to the psychiatric panel entail?
2. Was there any thought of or opportunity for minority opinion?
3. Did you believe that the narrative portion of the report was reliable and gave you the necessary background for a psychiatric evaluation? Who prepared the narrative portion?
4. Did you personally subscribe to the belief that there was strong reason to conclude that Dr. Ivins had acted alone in carrying out the attacks?
5. Did you endorse all the findings and recommendations of the report?

No response was received from any of those emailed.

(For further information on RSN, please see Appendix A below.)

Princeton puzzles
"The letters were mailed from a mailbox in front of KKG in Princeton," the summary asserts, referring to offices of Kappa Kappa Gamma, a sorority with which Ivins was obsessed, at 20 Nassau Street.

That's the FBI claim, based on the reported finding of spores at a mailbox a few steps from Nassau street, a local name for Route 27, and Route 206. The mailbox site is at Nassau and Bank streets, across from University Place.

In 2002 there were three mailboxes at Nassau and Bank, according to an observer, Richard M. Smith. Two were for receiving mail and one for storing mail temporarily.

http://www.computerbytesman.com/anthrax/princeton.htm

There is now in November 2014 one standard mailbox and the storage box. So we can assume that the presumed spore-laden box was removed. It is not apparent whether the other standard mailbox was removed and replaced, though the Wall Street Journal in August 2002 said officials had removed "the box" for further tests. Attack letter postmarks had led to the swabbing of mailboxes in the Hamilton, N.J., postal region, with swabs tested for anthrax spores.

One can assume that the other standard mailbox at Nassau and Bank tested negative, and one can guess that the storage box was not swabbed because it is not used by the public.

The faded green storage box, which was manufactured in the 1954, still stands at Bank and Nassau.

This writer checked news reports from the period and found nothing about a decontamination operation at the busy intersection. One would think that once the site was definitively identified as anthrax-contaminated, the area around the tainted mailbox would have been decontaminated and, as a safety precaution, all other mailboxes on site removed. It seems unlikely that, had it been removed, the old storage box would have been returned to the spot.

No covert operation via secret military flights can be officially considered -- though the attack anthrax is apparently derived from a military laboratory.

In addition, nearby is a large shade tree, meaning that spores would have been protected from sunlight and could have posed a significant hazard for months or years. But, there seems to have been no concern about this possibility.

Obviously, it is possible that a decontamination was conducted very quietly, or that authorities were simply negligent about public safety. However, it seems fair to wonder whether the letters were sent from the location claimed.

This suspicion is underpinned by Glenn Greenwald's report in Salon arguing that the FBI had been forced to change its story about the Princeton mailings after he and others spotted an absurd contradiction.

http://www.salon.com/2008/08/18/anthrax_7/

Greenwald challenged a Washington Post story that said, "A partial log of Ivins's work hours shows that he worked late in the lab on the evening of Sunday, Sept. 16, signing out at 9:52 p.m. after two hours and 15 minutes. The next morning, the sources said, he showed up as usual but stayed only briefly before taking leave hours. Authorities assume that he drove to Princeton immediately after that, dropping the letters in a mailbox on a well-traveled street across from the university campus. Ivins would have had to have left quickly to return for an appointment in the early evening, about 4 or 5 p.m.

"Ivins also had ample time to return to the same Nassau Street mailbox the following month, over the Columbus Day weekend, when a second group of letters was sent to Senate offices and media organizations, the sources said, offering new information that they said underscored Ivins's opportunity to commit the crime."

http://www.washingtonpost.com/wp-dyn/content/article/2008/08/07/AR2008080703443_pf.html

Greenwald wrote, "But almost immediately after the FBI leaked this theory as to when and how Ivins traveled to New Jersey undetected, it was pointed out in several online venues, including here, that this timeline made no sense whatsoever — that, indeed, the FBI’s own theories were self-contradictory. In the documents that the FBI disclosed two weeks ago, it itself defined the 'window of opportunity' for mailing the September 18 postmarked letters as beginning on September 17 at 5:00 p.m. (after which letters dropped in that mailbox would have received a postmark of September 18, but before which they would be postmarked September 17). Thus, based on the FBI’s own facts, it would be physically impossible for Ivins — as the FBI claimed to the Post — to have driven to New Jersey after taking administrative leave in the morning in order to mail the anthrax letters, since he returned that day to Maryland for a 4:00 or 5:00 p.m. meeting, and thus could not have dropped the letters in the mailbox after 5:00 p.m."

The Post then ran a story based on federal sources that modified the timeline, having Ivins driving to Princeton on the evening of Sept. 17.

An editor might say that use of anonymous sources poses risks to a story's accuracy. And it is also possible a reporter misinterpreted what he or she was told.

But this mistake should be seen in light of a pattern of federal errors, deceptions and omissions as to its theory about Ivins.

Silicon alley
From the summary (with numbering added):

[1] "Throughout the course of the investigation, repeated challenges have been raised to this finding that the spores were not weaponized. The challenges have their root in an initial finding by the Armed Forces Institute of Pathology (“AFIP”) that, upon gross examination, the spores exhibited a silicon and oxygen signal.

[2] However, subsequent analysis of the spores by Sandia National Laboratories, using a more sensitive technology called transmission electron microscopy (“TEM”) – which enabled material characterization experts to focus its probe of the spores to the nanometer scale – determined that the silica was localized to the spore coat within the exosporium, an area inside the spore. In other words, it was incorporated into the cell as a natural part of the cell formation process.

The summary continues, “The spores we examined lacked that fuzzy outer coating that would indicate they’d been weaponized,” stated Dr. Paul Kotula of Sandia, who personally examined the spores from the 2001 attacks. When presented with these results, Dr. Peter Jahrling, a USAMRIID scientist who had reviewed the initial AFIP results and stated publicly in late 2001 that the spores had been weaponized, retracted his earlier statement, telling the Los Angeles Times on September 16, 2008, 'I believe I made an honest mistake'.”

This reporter's analysis follows:

[1] There are a number of means to weaponize anthrax spores: gene-splicing or possibly cultivation to increase resistance to antibiotics; microencapsulation to shield spores from the human immune system; purification, along with possible neutralization of electric charges to make spores go airborne easily; and addition of fused silica, which is commonly used to make powders less sticky and hence easier to aerosolize. When Ivins and his immediate supervisor, Lt. Col. Jeffrey J. Adamovicz, opened the plastic bag holding the Daschle powder, they were startled to see the spores fly out all over the place, according to Stevens case testimony.

Tests of the attack matter showed that it had no antibiotic resistance, indicating that advanced weaponization had not been used. However, virologist Jahrling was alarmed by the initial silicon signal and rushed to the White House to brief top officials.

[2] The Sandia analysis of attack powders sent to Sen. Patrick J. Leahy and the New York Post showed that fumed silica was not present in either sample, but that the spores tested positive for silicon.

According to NAS scientists, the evidence they saw convinced them that the amount of silicon detected in the Leahy powder could be completely accounted for by natural spore uptake from silicon in laboratory equipment. However, they pointed out that there was substantially more silicon detected in the Post powder than could be accounted for by silicon uptake in spore coats. This fact was obviously known to federal investigators when the summary was being prepared.

[For more on the silicon uptake matter, please see Appendix B below.]

The Post powder from the envelope postmarked Sept. 18 was a much more crudely prepared form of anthrax than the Leahy and Daschle powders sent two weeks later with an Oct. 9 postmark.

Asked at an FBI science briefing about the big discrepancy between silica levels in the attack powders, FBI scientist Vahid Majidi replied, "Well, the water in New Mexico has ten times more silicant in it then the water in some other states..."

The NAS panel would later observe: "The high levels of silicon found in the attack powders are extremely unusual."

A reporter at an FBI science briefing asked, "Would it be fair to say then that the silica and oxygen presence in these spores was, for want of a better term, accidental or not intentional or put there by God or something, but it just happened?"

An unnamed official responded: "Well, there are scientific reasons behind it. I mean, you know, Bacillus species often produce proteins that are -- whose sole purpose is to chellate metals and other minerals. And the theory behind it is that it makes the spore heartier. That if the spore mineralizes they're more -- so that's a scientific theory."

"But that's something the anthrax did, not man?"

"The understanding of that process is not well understood," the official replied.

Or, in other words, the science briefers have parried the issue about high silicon content in the Post letter without saying that its presence was regarded by microbiologists as very unusual.

A related question at that briefing: "Did you try and duplicate the process? And how close did you get to making something like, you know -- the finer preparation that appeared?"

Majidi replied, "We were able to get those spores minus the silicon signal."

At another briefing for science writers, a questioner asked whether there was any truth to news reports that the FBI had been unable to replicate the attack spores.

Majidi replied, "If I make soup at home at two different times, they are not going to taste the same. So the fact that we can't duplicate a single powder prep is not unusual in any realm." At this briefing, he kept mum about the inability to replicate the silicon signal.

The public has not been told what the FBI scientists did to reverse-engineer the attack anthrax, with Majidi having excused that opaqueness on national security grounds. But presumably the FBI's consultants used equipment comparable to what was available at Fort Detrick. Despite assuring the press that the silicon signal resulted from a "natural" process, the FBI scientists skirted around the anomalous Post result.

Ivins told the FBI that when he saw the purity of the Daschle powder. he immediately thought: "Fermenter!" He explained that fermenters tend to produce clean spore concentrations while matter grown on agar plates is much dirtier, or contaminated by other biological material.

Interestingly, the Post and NBC powders were quite crude. So the crude matter had silicon added, but silicon that would do no harm. One wonders if someone added silicon in an amateurish attempt to weaponize it, or whether someone added it to make it look as though semi-trained al Qaeda terrorists were responsible. Of course, one can come up with a scenario in which Ivins adds silicon in a devious ruse to fool investigators. According to the summary, Ivins's seemingly odd late hours in the lab began in August, weeks before Sept. 11 (and federal officials have never explicitly said that they believe Ivins began preparing attack powder before 9/11, though that is the logical conclusion of their scenario).

After Sept. 11, the summary shows, Ivins's lab hours zoomed up and fell rapidly once all anthrax attacks were completed.

Yet one wonders why Ivins didn't bother to add silicon to the new powder, and why he was no longer concerned with making the powder look crude (grown from agar plates, which would have been within al Qaeda's capability), but now went full-bore with a fermenter (assuming he somehow got his work place fermenter up and running).

Why the change in anthrax quality? It has been reported that at the time the Senate attack letters were mailed the Bush administration was high-pressuring Senate Democrats -- in particular Leahy and Daschle -- to get swiftly behind the emergency powers, or Patriot, bill,. Otherwise, the public is left to speculate that Ivins had already planned to blame al Qaeda when he was preparing the crude powder, but after 9/11 was electrified into throwing caution to the wind by dramatically ramping up his action.

The point here is that the FBI and Justice Department blurred the matter of high silicon levels in some attack powder by deliberately confusing that issue with the fact that other attack powder had routine levels of silicon.

A paper by biologists Martin E. Hugh-Jones, Barbara Hatch Rosenberg, and Stuart Jacobsen argues that the high level of silicon, along with iron and tin, detected in the attack spores suggests the possibility of microencapsulation of spores, which they say is a known method of weaponization. Rosenberg, an expert on biological weapons, has been a persistent critic of the FBI's anthrax probe.

However, if microencapsulation was used, one wonders why the cruder spore powder would contain encapsulated spores but not the purer powder sent later. (In this respect, it may be noted that the NAS panel cast a skeptical eye on other anomalies NAS scientists noticed in the spore test reports, as well as scorning the FBI's statistical analysis.)

The FBI's Amerithrax page has a link titled "Science Briefing on the Investigation," but only the opening remarks, which includes introduction of the FBI's blue-ribbon group of consultant scientists, is available. This reporter obtained transcripts of the two science briefings online after some effort, as at the time of writing they were not readily available via Google.

Aug. 18, 2008 science briefing for the general press
http://sandeeee.blogspot.com/2014/11/fbi-science-briefing-for-general-press.html

Aug. 18, 2008 briefing for science writers
http://bloximages.newyork1.vip.townnews.com/fredericknewspost.com/content/tncms/assets/v3/editorial/d/f8/df85eef6-ee4b-11e2-9630-0019bb30f31a/51e59ba745e4c.pdf.pdf

or
http://fredericknewspost.com/content/tncms/assets/v3/editorial/d/f8/df85eef6-ee4b-11e2-9630-0019bb30f31a/51e59ba745e4c.pdf.pdf

Rubber sole
From the summary:

"Finally, when RMR-1029 was sent over for the aerosol challenges, it was frequently diluted substantially, usually 1,000-fold. Given the highly concentrated material used in the mailings, experts consulted have stated that it is extremely unlikely that such diluted material could have been used in the mailings."

This statement makes it seem as though the attack material would have come straight from the 1029 flask. But all scientists, including the FBI's scientists, were keenly aware the attack spores were grown from a seed batch of the 1029-type substrain of Ames. Scientists testified in the civil case that a 1029-type preparation could have been grown from a very low number of spores. Dilution would not have been an issue if the necessary time and equipment were available.

One must be cautious about the various Justice Department claims about dilutions, dilutions that could have been done deliberately in order to conceal the presence of the four genetic markers found in the attack spores. At one point, an FBI report says, a bureau microbiologist challenged Ivins on the Navy's finding that a 1029 sample its experts analyzed had on the order of 109 (or one billion) spores per unit milliliter. Ivins expressed skepticism and permitted the FBI scientist to stand at his side and replicate every part of Ivins's measurement process. Both Ivins and the FBI scientist obtained a 1010 (or 10 billion) measure.

From the behavioral analysis:

"Dr. Ivins acknowledged that he was the sole custodian of the 'RMR-1029' flask that held the anthrax used in the attacks, and had unrestricted and unobserved access to the 'hot suites' where work with anthrax could be conducted anytime day or night."

From the summary:

"The evidence gathered in this seven-year investigation establishes that Dr. Bruce Ivins was the anthrax mailer – both direct evidence that anthrax spores under his sole and exclusive control were the parent material to the anthrax spores used in the attack and compelling circumstantial evidence set forth below."

In fact, Ivins only acknowledged being responsible for the flask, telling the FBI that the RMR-1029 flask had always been in building 1425, where he worked, but that vials of the material were held in building 1412 for use in animal experiments. However, after Ivins died, Adamovicz, his supervisor in 2001, produced a copy of an Army document showing that the RMR-1029 flask had been stored for a while in the late '90s in building 1412. Adamovicz told a court proceeding that the FBI "didn't want you to see" that receipt copy, which he testified he had found in his personal files.

There is nothing unusual about Ivins's apparent forgetfulness or misperception, and, in fact, Adamovicz's document establishes that various people other than Ivins had access to RMR-1029 prior to the attacks. Those with access or portential access included Steven Hatfill, who was reportedly suspected of possibly obtaining waste anthrax from containers that were awaiting sterilization in an autoclave. Louise Pitt, who ran the animal experiments, and various animal handlers and others had direct access.

Presumably, these experiments were still going on in 2001, though an interim lack of funding seems to have limited them in August and early September.

Note that the summary statements above convey the impression that Ivins had control of the 1029 anthrax fluid, as opposed to the beaker in which it was held, implying that the attack spores could only have been grown from the liquid in flask RMR-1029.

However, prodded by reporters, FBI scientist Majidi conceded that material identical to the RMR-1029 material had been located at Battelle Memorial Institute in Ohio. Battelle is a major CIA and defense contractor known to have worked on biological defense matters. Three biologists, citing the investigative summary, said the FBI made unwarranted assumptions that the attack anthrax could not have been made at Battelle while a buddy system was in force -- that is, the FBI assumed that only a single individual was involved -- and that Battelle and other laboratories were too far from New Jersey, where postmarks showed that the attack letters were mailed. The FBI reportedly checked commercial flight records and found nothing.

When a science writer asked where the 1029-type anthrax had been found, Majidi replied, "What we found was in RMR-1029, the repository, and then the laboratory, and the letters." Majidi was referring to the flask numbered RMR-1029, the FBI's repository of anthrax samples from numerous labs, Ivins's laboratory and the attack letters.

There is no mention of Battelle in that briefing.

Further, according to the three biologist critics, 10 laboratories showed samples that had one or more genetic markers. The fact that all four markers did not appear in these other samples does not mean none of them was a match, the trio of biologists wrote. False negatives are a rather common problem in biological experiments.

The scientists observed that among the eight laboratories that submitted a total of 63 samples with between one and three positive assay results were Dugway Proving Ground in Utah, the Naval Medical Research Center, Northern Arizona University, the Canadian Defense Research Establishment at Suffield, and a second sample from Battelle. Also, in December 2001, federal sources told the New York Times that Fort Detrick anthrax had been sent to the University of New Mexico.

"The submitters of the other three samples have not been revealed," the scientists wrote.

The three argued that the most likely sites of production of the attack anthrax are those that worked with dry spores: Battelle, Dugway, and Suffield, and their associated institutions and subcontractors.

"Battelle, for example, is well-known for its aerosol study capabilities and biodefense activities, for which dry spores are routinely needed," the three experts observed.

Ivins told the FBI that his institute never worked with dry spores because to do would pose an exceptional danger in the metropolitan area around Washington.

However, federal officials said that Ivins had had training on a lyophilizer (freeze dryer), which could have been used to dry anthrax. Ivins said he doubted use of that machine because it would damage the spore preparation too much for good quality powder. Ivins's colleagues argued that he couldn't have used the lyophilizer, which was not in a hot suite, undetected. One colleague, Patricia Worsham, testified that she would have thought non-vaccinated persons who worked in the unprotected area would have been sickened by anthrax.

Others testified that decontaminating the machine required a special mechanical process by trained technicians, and also that Ivins would have been unable to manhandle the machine into the hot suite in order to use it in a safe environment. But Paul Keim, the FBI consultant scientist whose genetic analysis pointed to flask RMR-1029, was skeptical of that argument, saying that microbiologists know how to clean up.

Though the Justice Department is unwilling to talk much about potential conspiracy, it seems as though FBI agents were not that naive. An anthrax scientist who worked at Battelle drew the FBI's interest in 2002 and quickly spiraled into alcoholism and death, relatives told the New York Times. Little is known about what caused Perry Mikesell to snap. He may have had remorse over recognition that his career choice was marked more by death than by life. Or, he may have felt shunned by fellow workers to the point that he was unable to cope. Or, Mikesell, who had worked alongside Ivins for years at Fort Detrick, may have felt remorse over complicity in treachery and anguish about the possibility of being tried for treason.

Whether Mikesell's anguish -- so similar to that experienced by Ivins as his end drew near -- was deserved or not, it seems apparent that the FBI field agents were unconvinced by the buddy system records at Battelle, which does much classified work. Nor were they convinced by commercial flight records.

Hatfill, who was cleared by the Justice Department shortly before Ivins's death, had supervised construction of a mobile biowarfare lab while working for a major defense contractor, Science Applications International Corp. (SAIC).

The New York Times reported on July 2, 2003 that the FBI had intercepted the lab months earlier on the road to Fort Bragg, where it was to be used for training for the nearing Iraq war, and tried to impound it and test it for traces of anthrax. However, after "tense discussions," the Army held on to the lab, the Times said. A July 3, 2003 Washington Post story says examinations of the lab found nothing.

The newspaper accounts do not say whether the FBI was able to keep the lab under eyeball surveillance at all times, or whether its examiners, as opposed to Army examiners, were permitted to swab it.

As noted above, the behavioral analysis says:

"Later, Dr. Ivins’ technicians reported that they had never seen the flask. He had been its sole custodian and presumably had kept it concealed in the cooler."

It continues:

"When investigators pressed Dr. Ivins's two lab technicians to describe what RMR-1029 looked like. neither of them could do so. They were aware that Dr. Ivins had created a spore preparation called the 'Dugway Spores' -- which Dr. ivins explained to the prosecution team was another name for RMR-1029.

"However, neither lab technician was aware that the 'Dugway Spores' were contained in two flasks, and neither knew what a flask containing the 'Dugway Spores' looked like."

The idea that Ivins had been deliberately concealing the flask is somewhat blunted by the recollection of the technicians that they knew about the special anthrax material and by the testimony of Ivins's boss, Adamovicz, who said that though he couldn't recall whether he had ever observed the flask, he certainly knew of its existence. Ivins also told the FBI that he didn't supply much of that anthrax to many researchers, though many wanted it.

From the behavioral analysis:

"Do the sealed psychiatric records support or refute the Department of Justice’s determination that Dr. Ivins was the sole mailer of the anthrax letters?"

The thrust of the report is yes. The report takes Ivins's mental health files and comes up with a psychological scenario that seems consistent with various clues, such as those in the attack letter addresses. The speculation is couched in scientific-sounding terms. And yet, it is quite interesting that patterns of evidence pointed to others, as well: Steven Hatfill, Perry Mikesell and Joseph Farchaus, all former Fort Detrick scientists.

A welter of intriguing associations surrounded Hatfill, prompting strong suspicions aired by Rosenberg and New York Times columnist Nicholas Kristof. Hatfill strenously denied having been involved in Rhodesia's germ warfare operations against rebels, though the Missourian returned from Africa in the 1990s and gravitated into Pentagon biological warfare work. His medical doctorate was valid but his PhD in microbiology was bogus. Nevertheless, after a two-year postdoctoral stint at the Centers for Disease Control, he went to Fort Detrick for another two-year post-doctorate as a virologist.

While there he became very friendly with the aging William Patrick, father of America's offensive biowarfare program, which had been officially scrapped by President Richard Nixon.

While at SAIC, Hatfill had commissioned a report from Patrick on risks presented by mailed anthrax that had been published in 1999. (Some observers have wondered whether the still-classified report was a "blueprint" for the 2001 mail attacks; Patrick had foreseen a low risk but had failed to consider the high-speed mail-sorting machinery that was said to have "milled" the powder into a purer form that made it highly dangerous.)

The FBI eventually ruled out Hatfill on grounds that his property and Patrick's basement, which contained a biological laboratory, were clean of anthrax.

The summary exonerates Hatfill thus:

"Ultimately, the FBI's genetic analysis of the organism used in the attacks led investigators to exclude him conclusively as a suspect. Early in the investigation, it was assumed that isolates of the Ames strain were accessible to any individual at USAMRIID with access to the bio-containment labs. Later in the investigation, when scientific breakthroughs led investigators to conclude that RMR-1029 was the parent material to the anthrax powder used in the mailings, it was determined that Dr. Hatfill could not have been the mailer because he never had access to the particular bio-containment suites at USAMRIID that held the RMR-1029. In other words, although Dr. Hatfill had access to the Ames strain anthrax while at USAMRIID, he never had access to the particular spore-batch used in the mailings."

Now it is possible that the bureau was actually basing its decision to clear Hatfill on data that have been withheld, and so one should beware leaping to any conclusions in that respect.

However, consider these points:

The government is assuming Hatfill cannot be guilty because he could not have pulled off the attacks without inside help.

Interestingly, Ivins told the FBI that he had worked on a national security case concerning anthrax "from Iraq," and had deliberately mislabeled it in order to conceal its national security status. It is not necessarily ridiculous to wonder whether Ivins was a go-to person in what he thought was a national security matter. (If so, however, Ivins apparently went to his death with his lips sealed.)

The summary's contention that Hatfill had no access to the Ames 1029 substrain of attack anthrax is countered by testimony that Hatfill had worked largely in Building 1412 where the 1029 flask was stored for a time in the nineties and where vials of the 1029 substrain were used for animal experiments. Hatfill was at Fort Detrick until 1999, but the flask-1029 material was formulated sometime between 1997 and 1999.

Another scientist, Farchaus, lived within 15 minutes of Princeton, where the attack letters were apparently mailed. Additionally, he reportedly had a relative who lived very close to an elderly Connecticut woman who died from anthrax. To stretch a point, the locales of Kendall Park and Monmouth Junction, which have a return address and a zip code that relate to the mailings, are both roughly 15-minute drives from Princeton.

In the case of Mikesell, whom the summary doesn't mention at all, we don't know what the associations were that raised FBI suspicions. But apparently it was thought that some things didn't add up.

All this is to say that patterns of circumstantial evidence can be hung around the neck of any one of these men.

Tales from decrypt
The Justice Department, strongly assisted by the FBI psychiatric consultant team, made it appear that Ivins was strangely obsessed with codes and that this obsession is reflected in the code in the two Senate attack letters.

The emphasized A's and T's in the identical letters, the FBI found, relate to two of the letters used in DNA codons.

To buttress its case of a pattern of Ivins associations with DNA codons, the summary relates that on July 27, 2000, Ivins "forwarded" an email to former colleague no. 1 (Fellows), which began "Biopersonals: I have single-stranded too long! Lonely ATGCATG would like to pair up with congenial TACGTAG" along with a note "this is some cute humor for anyone who has ever had anything to do with biochemistry or molecular biology."

A number of coworkers have testified that Ivins enjoyed sending off funny emails, and the term "forwarded" implies the DNA joke was making the rounds among scientists. The joke is that in the replication process, a DNA string joins together with its inverse.

Perhaps the email would have been relevant had the joke DNA strings carried secret messages similar to the purported messages in two of the attack letters. But, following the FBI decoding procedure, the result for the first string is, "mhm" and "eee." For the inverse string, the result is "tv(stop)" and "ee(stop)" or perhaps "tvs" and "eep".

So how is the joke email relevant? It isn't. Not to worry. A footnote explains:

"This e-mail was notable not because of any particular meaning ascribed to those specific nucleic acids, but rather because it demonstrated Dr. Ivins’s familiarity with DNA, specifically As, Ts, Cs, and Gs."

And yet Ivins was a microbiologist who would have had at least some professional knowledge of DNA codons.

At any rate, the FBI code-crackers examined the "bolded letters" and discovered the left-to-right string

TTT AAT TAT – an apparent hidden message. The three-letter groups appeared to be codons, meaning that each sequence of three nucleic acids will code for a specific amino acid.
TTT = Phenylalanine (single-letter designator F)
AAT = Asparagine (single-letter designator N)
TAT = Tyrosine (single-letter designator Y)

The FBI, says the summary, gleaned two meanings from this analysis: "PAT" and "FNY."

"Pat" is short for his former technician, Patricia, with whom Ivins was allegedly obsessed, the summary says. Patricia Fellows left Fort Detrick to upgrade her education and further her career.

On the other hand, "Pat" is a common name. For example, there is another Fort Detrick anthrax scientist, Patricia Worsham. Then there is Patrick Leahy (though the coded mailings went to the media and not the Senate). Or what of the father of the U.S. bioweapons program, William Patrick?

As for, "FNY," this is taken as representative of Ivins's psychotic antipathy toward New York. But, no evidence of such an extreme hatred is produced. Rather, the summary mentions his dislike of New York City, which is a distaste shared by many Americans and the reason New York officials promoted the "I love N.Y." campaign. At another point, the summary portrays his fan loyalty, expressed in a joking manner, as a psychotic hatred of the New York Yankees.

The summary continues, "It was obviously impossible for the Task Force to determine with certainty whether either of these translations was correct." True, one can't even assign a statistical confidence interval. But, argues the Justice Department, "the key point is that there is a hidden message, not so much what that message is."

But if the FBI is unsure of the meaning, then the idea that the two messages refer to his young friend, who had gone on to pursue a medical degree, and New York City rests on air. In 2001, colleges around the nation were beginning to prepare students for the genetic engineering revolution sweeping industry and academia. Even non-biology majors were often given some awareness of DNA codons.

On the other hand, as officials assert, Ivins voluntarily told the FBI, after confiding in Fellows, that as a younger man he had broken into KKG sorority houses and stolen a decoder used for secret rituals and later the code book itself. Also, he liked to send gifts to women coworkers and let them guess who was sending them, which they usually did. The FBI sees this behavior as a desire to have the women "decode" his cryptic antics. As he was in his early thirties at the time of the sorority burglaries, such actions -- had they become known -- would have destroyed his career, underscoring the idea that the scientist suffered from a long-term mental illness.

A couple of other points:

The highlighted letters are the same as those found in Mohamed Atta's last name.

This reporter was able, by converting the T's and A's to the 1's and 0's of the binary number system and using a bit of numerology, to come up with a reading of "9/11."

But supposing the FBI's interpretion is partly correct, how do we know that the message wasn't intended simply as "FNY"? Why assume both messages were intended?

Also, why send letters overtly blaming Islamic extremists but "covertly" pointing to a "clever" scientist? The summary's theory is that Ivins was intrigued with the idea of wrapping one message inside another, as discussed in a book he owned.

Anyway, the summary relates, "Ivins showed a fascination with codes and also had an interest in secrets and hidden messages" and he "was also was familiar with biochemical codons." As a matter of fact, large numbers of people are enthusiastic about codes. An FBI website acknowledges this public interest and invites participation of code buffs.

The Justice Department goes to absurd lengths in its desire to persuade. Consider these words from the summary:

"Finally, Dr. Ivins’s own words demonstrated that he enjoyed playing detective and unlocking secrets. In an e-mail to Former Colleague #1 (Linscott) on June 26, 2000, he wrote: 'For me, it’s a real thrill to make a discovery, and know that I’ve just revealed something that no one else in the world ever knew before. I feel like a detective, and that which is unknown dares me to try to find out about it, to decipher its code, to understand it, to fit it into the puzzle or 'Big Picture'.”

Officials seem to be overlooking the fact that Ivins was a scientist, and this is the sort of thing scientists say.

The FBI reported that Ivins owned a 1992 copy of American Scientist that includes an article "The Linguistics of DNA," which discusses, "among other things, codons and hidden messages."

This reporter scanned the article by D.B. Searls and found that indeed there are a few graphs that contain codons. However, the article is a dense excursion on the DNA process as a form of information transfer. It is not concerned with secret messages or cryptography. The article is available at JSTOR. [Please see footnote on Searls background below.]

Another item owned by Ivins was a copy of the book Godel, Escher and Bach -- An Eternal Golden Braid (abbreviated GEB) by Douglas Hofstadter.

Consider this statement from the summary: "While the subject matter of GEB may be confusing to some, it nevertheless remains of evidentiary value to investigators." That is, the book is a complex intellectual excursion and isn't a handbook for code-crackers or spies.

The book does discuss many ideas about information transfer. It might be described as a playful discussion of how mathematical logic relates to human cognition. In a word: philosophy.

Hofstadter himself told USA Today he thought the FBI conjecture was a "red herring," though the logician's opinion needn't be correct.

GEB does include a fun bit of code with certain letters in boldface. And elsewhere in a fat book it does talk about codons.

The summary observes: "The second relevant passage in GEB contains a series of dialogues" of creatures with names that begin with codon letters. Within one dialogue occur the names:

De Morgan
Abel
Boole
Brouwer
Sierpinski
Weierstrass

In this passage, Achilles explains, “I believe it is supposed to be a Complete List of All Great Mathematicians. What I haven’t been able to figure out is why the letters running down the diagonal are so much bolder.” To which Tortoise replies that at "the bottom it says, ‘Subtract 1 from the diagonal, to find Bach in Leipzig'.”

If one decodes this list as directed, the answer is “Cantor.” To understand this message properly, one needs to know that Bach was the Cantor of Leipzig.

This passage is similar to the emphasized A's and T's in the anthrax attack letters, the summary writer believes. Except that the anthrax code seems to be far less clever than Hofstadter's.

By itself the coincidence is unremarkable. So what that scientist Ivins owned a book on scientific matters that happened to contain similarities to the anthrax letter code? And the paper by Searls seems barely relevant. Also, any American capable of launching the anthrax attacks is likely to have been familiar with DNA codons, and quite a few may have owned a copy of GEB, which achieved enduring popularity in the scientific community after its appearance in 1979.

But, the summary answers such doubts by relating that, soon after a search of his house, the harried scientist in November 2007 threw out GEB and the magazine containing the Searls article.

"The night he did so, Dr. Ivins behaved in the fashion of a nervous man, watching for the garbage truck, and then checking the garbage can to ensure that it was gone, and finally checking the bushes to see if he was being watched."

One may wonder when the video recording of this incident will be released.

The summary does not consider the possibility that, by this time, a panicky Ivins was worried that the FBI would "read something into" the book and the magazine. Another point: was Ivins really so naive as to not realize his garbage would be checked after pickup? If the written materials were so incriminating, why not wait until no one is home and burn them? Even so, it must be granted that anxious people make foolish mistakes.

At another point, the summary says, Ivins lent GEB to a female friend, recommending it enthusiastically. Upon learning sometime later that she hadn't read it, he asked for its return. This is meaningful, says the summary, because when asked by the FBI in January 2008 about books he had lent the woman, he did not mention GEB, "one of his favorites," that he had given her about a year earlier.

Granted, an alert FBI agent would see this as grounds for suspicion of evasiveness. On the other hand, human memory is notoriously fickle, especially after a year's lapse. And there remains the other possibility that an innocent man -- who as it happens suffered from episodes of clinical paranoia -- feared the government would want to read something in to his possession of GEB.

The summary adds, "Also reinforcing the importance of GEB to Dr. Ivins was the fact that he once sent an email to Janna Levin, complimenting her work, presumably referring to A Madman Dreams of Turing Machines, a book that discusses GEB and chronicles the lives of Godel, known as the world's greatest logician, and Alan Turing, known as an exceptional code-breaker."

A search of the novel's text via Amazon returns blanks for search terms "Escher," "Bach" and "Hofstadter."

The Justice Department chooses to emphasize Turing's code-breaking, but he was also a giant of mathematical logic, whose "Turing machine" was an intellectual exercise that, along with Godel's chief theorem, revolutionized both logic and mathematics.

In words paralleling those in the summary, Rachel Lieber, lead federal attorney in the Ivins case, told Frontline in 2011 that the “confluence of all these things taken together, that's the compelling evidence.”

“It's only when you take a step back and you look at all the evidence taken together can you realize this is the right person,” Lieber said.

In August 2008, soon after Ivins's suicide, U.S. Attorney Jeffrey Taylor, FBI Assistant Director Joseph Persichini and other officials assured the press that the pattern of circumstantial evidence against Ivins as the sole anthrax attacker was strong.


FOOTNOTE: Searls lists his expertise as computational and systems biology, pharmacoinformatics macromolecular linguistics data integration philosophy of science
Searls, D. B., 1992. The linguistics of DNA. Am. Scient. 80: 579-591.

Appendix A
The psychiatric report lists Saathoff and DeFrancisco as chair and vice chair, respectively.

Others:

David Benedek, MD, psychiatry professor at the Uniformed Services University School of Medicine; Anita Everett, MD, psychiatrist with the Johns Hopkins University School of Medicine; Christopher P. Holstege, MD, a toxicologist at the University of Virginia School of Medicine; Sally C. Johnson, MD, psychiatry professor at the University of North Carolina-Chapel Hill; J. Steven Lamberti, MD, psychiatry professor at the University of Rochester Medical Center; and Ronald Schouten, MD, a psychiatrist specializing in legal matters with the Massachusetts General Hospital Harvard University School of Medicine.

J. Patrick Walsh is listed as a "special assistant and coordinator to the panel and its operations."

Appendix B
An FBI official explained that the possibility of natural silicon uptake into the spore coats had been discovered during a review of scientific literature. An old published paper led investigators to the widow of of one of the authors, A.P. Somlyo, who still had her husband's samples from the experiment on hand. Analysis of the Somlyo samples confirmed the presence of silicon in the spore coats, the official said.

The Somlyo article mentioned above says the silicon spike Somlyo and his coauthors detected was unlikely to have been solely from a contaminant, from the glass containers or from silicon material used in freeze drying. So, the online copy leaves us to conjecture that it came from the growth medium.
Stewart, M., A. P. Somlyo, A. V. Somlyo, H. Shuman, J. A. Lindsay, and W. G. Murrell. 1980. Distribution of calcium and other elements in cryosectioned Bacillus cereus T spores, determined by high-resolution scanning electron probe x-ray microanalysis. J. Bacteriol. 143:481-491. [PMC free article] [PubMed]

The online copy's description of method curtly says that the method is identical to that used by another research team as described in “Cytological and Chemical Structure of the Spore” by W.G. Murrell, D.F. Ohye and Rosalind A. Gordon. This reporter's copy of that article shows that no silicon was among chemicals tested, and there is no discussion of silicon uptake. However, the article says that a New Brunswick Scientific shaker was used. Current New Brunswick shakers come with a silicone mat.

One of Somlyo's coauthors was W.G. Murrell. He is also coauthor of another paper in which silicone antifoam is used in experimental preparations.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2106236/pdf/579.pdf


DRAFT 0: Nov. 3, 2014
DRAFT 1: Nov. 5, 2014
DRAFT 2: Nov. 7, 2014. Correction of a very minor inaccuracy.
DRAFT 3: Nov. 13, 2014. Very minor clarification.

Friday, February 14, 2014

Number theory challenge: find the flaw

Concerning a noted result of number theory

1. Any three lengths can be arranged into a triangle.

2. So if a, b and (an + bn)1/n were all integers, then these three lengths would form a triangle.

3. For n = 2m+1 and m > 0, a, b and c ( = (an + bn)1/n ) form a non-right triangle.

4. Momentarily not worrying about whether n is even or odd, let n = 2t, we have

[(at)2 + (bt)2)]1/(2t) < [ (at)2 + (bt)2)]1/2

5. Or,

[an + bn]1/n < [an + bn]1/2

6. And statement 3. is established.

7. A standard proof of the law of cosines places the longest side c, off the x axis.

8. We shall use this law, but also establish another relation by placing c on the x axis and the altitude of the triangle ABC (the capitalized letters represent the vertices) on the y axis. We call the origin 0, so that C0 is the altitude, which we call h. We say the length BO = r and the length
0A = c - r. Arbitrarily, a < b < c, with a =/= 0.

8a. That is, we have two right triangles joined by h, which is perpendicular to c. Under side b on the x axis is base r and under side a on the x axis is (c - r).

9. We obtain the simultaneous equation:

(c - r)2 + h2 = b2
r2 + h2 = a2

10. Which gives

c2 -2cr = b2 - a2

10a. Note that for statement 2. to hold, r must be rational.

11. Or

c2 = b2 - a2 + 2cr

12. We also have the cosine formula

c2 = b2 + a2 - 2abcos(c)

13. Combining

c2 = b2 - a2 + 2cr
c2 = b2 + a2 - 2abcos(c)

14. We obtain

c2 = b2 + cr - abcos(c)

15. Or

c(c - r) = b(b - acos(c))

16. So that

c(c - r)/(b - acos(c) ) = b

16a. Note that this identity does not apply for n = 2, as cos(c) = 0 and c2 =/= b2 - a2 + 2cr.

17. Well

cn - bn = an

18. And

cn - cn(c - r)n/(b - acos(c))n = an

19. So

cn[1 - (c - r)n/(b - acos(c) )n] = an

19a. Note that as c - r and a are both positive, we require acos(c) > b/a.

19b. Check: let cos(c) = b/a.

19c. Then,

c2 = b2 + a2 - 2ab(b/a)

19d. Or, c2 = a2 - b2

which, by condition b > a, would make the right side negative (and c a complex number).

20. Anyway

c[1 - (c - r)n/(b - acos(c))n]1/n = b

21. Case i.

Suppose (c - r)/(b - acos(c)) = p/q where p and q are relatively prime integers.

In that case, we are done.

22. Case ii.

Suppose p/q = -j = |k|, where k and j are integers. (We are assuming n = 2m+1.)

23. So then

c(kn + 1)1/n = b

24. But

kn < kn + 1 < (k + 1)n

25. Or

k < (kn + 1)1/n < k + 1

26. Hence (kn + 1)1/n is no integer and can't be rational at all. So case ii is satisfied.

27. Now we are done.